Difference between revisions of "TSS:Hg 238111.1"
From referenceTSS
| Line 6: | Line 6: | ||
|distance=-33 | |distance=-33 | ||
|distance_to_tss=30943 | |distance_to_tss=30943 | ||
| − | |end= | + | |end=57524834 |
|end_of_center_position=57524834 | |end_of_center_position=57524834 | ||
|entrez_id=128854 | |entrez_id=128854 | ||
| Line 25: | Line 25: | ||
|num_trans=46 | |num_trans=46 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=57524833 |
|start_of_center_position=57524833 | |start_of_center_position=57524833 | ||
| − | |strand= | + | |strand=- |
|transcript_name=ENST00000608263.5 ENST00000426658.6 ENST00000422109.6 ENST00000432255.6 ENST00000608720.5 ENST00000607923.5 ENST00000608158.5 NM_001269041 NM_001269044 NR_072975 NM_001269048 NM_001269052 DQ778110 DQ778115 DQ778116 DQ778117 DQ778118 DQ778121 DQ778119 DQ778120 DQ778114 | |transcript_name=ENST00000608263.5 ENST00000426658.6 ENST00000422109.6 ENST00000432255.6 ENST00000608720.5 ENST00000607923.5 ENST00000608158.5 NM_001269041 NM_001269044 NR_072975 NM_001269048 NM_001269052 DQ778110 DQ778115 DQ778116 DQ778117 DQ778118 DQ778121 DQ778119 DQ778120 DQ778114 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_238111.1 | |tss_id=hg_238111.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A6XGM4 A6XGM5 F5H2V8 Q8NI51 V9GYX4 V9GZ46 | |uniprot_id=A6XGM4 A6XGM5 F5H2V8 Q8NI51 V9GYX4 V9GZ46 | ||
}} | }} | ||
Revision as of 10:49, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 57524833 |
|---|---|
| End of the center position in the TSS region: | 57524834 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000608263.5 ENST00000426658.6 ENST00000422109.6 ENST00000432255.6 ENST00000608720.5 ENST00000607923.5 ENST00000608158.5 NM_001269041 NM_001269044 NR_072975 NM_001269048 NM_001269052 DQ778110 DQ778115 DQ778116 DQ778117 DQ778118 DQ778121 DQ778119 DQ778120 DQ778114 |
|---|---|
| Distance: | -33 |
| Num_trans: | 46 |
| All_trans: | ENST00000608263.5:-33 ENST00000426658.6:-33 ENST00000422109.6:-33 ENST00000432255.6:-33 ENST00000608720.5:-33 ENST00000607923.5:-33 ENST00000608158.5:-33 NM_001269041:-33 NM_001269044:-33 NR_072975:-33 NM_001269048:-33 NM_001269052:-33 DQ778110:-33 DQ778115:-33 DQ778116:-33 DQ778117:-33 DQ778118:-33 DQ778121:-33 DQ778119:-33 DQ778120:-33 DQ778114:-33 BC130486:-249 DQ778111:-264 AF336042:-264 DQ778124:-264 DQ778125:-264 DQ778126:-264 DQ778127:-264 DQ778128:-264 DQ778129:-264 ENST00000423479.7:-273 ENST00000502686.6:-273 ENST00000433949.7:-273 ENST00000539382.5:-273 ENST00000608903.5:-273 ENST00000608858.5:-273 ENST00000608108.1:-273 NM_001269043:-293 NM_001269054:-293 NM_001269049:-293 BC060763:-295 NM_001269050:-306 NM_001269055:-306 AK313990:-306 ENST00000243914.7:-375 AK128070:-375 |
TATA-Box annotation
| Distance to TSS: | 30943 |
|---|---|
| Nearest PromoterID: | NR_002781 |
| Entrez ID: | 128854 |
| Nearest Unigene: | Hs.647447 |
| Nearest Refseq: | NR_002781 |
| Nearest Ensembl: | ENSG00000235217 |
| Gene Name: | CCCTC-binding factor like |
| Gene Alias: | TSPYL3|bA392M18.1 |
| Gene Description: | testis specific protein Y-linked 26, pseudogene |
| Gene Type: | pseudo |
| CpG%: | 0.01 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
