Difference between revisions of "TSS:Hg 238263.1"
From referenceTSS
| Line 4: | Line 4: | ||
|HMGB1L1= | |HMGB1L1= | ||
|all_trans=X06989:-4 ENST00000474136.5:-12 BC004369:-12 ENST00000354192.7:-13 AF282245:-13 BC065529:-17 BC065523:-17 MA353526:27 LF214042:-32 MA449619:-32 ENST00000348990.9:-33 Y00264:-33 AK297412:-33 AK294534:-33 AK298861:-33 ENST00000346798.8:-36 NM_001136129:-36 NM_000484:-36 NM_201414:-36 NM_201413:-36 NM_001204302:-36 NM_001204301:-36 NM_001204303:-36 NM_001136130:-36 NM_001385253:-36 M35675:-36 AK297229:49 AK312326:49 ENST00000357903.7:-53 ENST00000358918.7:66 ENST00000439274.6:79 LF385141:-86 MA620718:-86 HM005315:93 AB384791:108 EU832797:113 GQ129348:113 KJ901289:113 LF213391:258 MA448968:258 LF210650:-326 MA446227:-326 ENST00000359726.7:-394 NM_001136131:-394 LF385472:-394 MA621049:-394 AK296229:-394 | |all_trans=X06989:-4 ENST00000474136.5:-12 BC004369:-12 ENST00000354192.7:-13 AF282245:-13 BC065529:-17 BC065523:-17 MA353526:27 LF214042:-32 MA449619:-32 ENST00000348990.9:-33 Y00264:-33 AK297412:-33 AK294534:-33 AK298861:-33 ENST00000346798.8:-36 NM_001136129:-36 NM_000484:-36 NM_201414:-36 NM_201413:-36 NM_001204302:-36 NM_001204301:-36 NM_001204303:-36 NM_001136130:-36 NM_001385253:-36 M35675:-36 AK297229:49 AK312326:49 ENST00000357903.7:-53 ENST00000358918.7:66 ENST00000439274.6:79 LF385141:-86 MA620718:-86 HM005315:93 AB384791:108 EU832797:113 GQ129348:113 KJ901289:113 LF213391:258 MA448968:258 LF210650:-326 MA446227:-326 ENST00000359726.7:-394 NM_001136131:-394 LF385472:-394 MA621049:-394 AK296229:-394 | ||
| − | |chr= | + | |chr=chr21 |
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|dJ579F20.2= | |dJ579F20.2= | ||
|distance=-4 | |distance=-4 | ||
|distance_to_tss=33 | |distance_to_tss=33 | ||
| − | |end= | + | |end=26170734 |
|end_of_center_position=26170734 | |end_of_center_position=26170734 | ||
|entrez_id=140690 | |entrez_id=140690 | ||
| Line 28: | Line 28: | ||
|num_trans=47 | |num_trans=47 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=26170732 |
|start_of_center_position=26170733 | |start_of_center_position=26170733 | ||
|strand=- | |strand=- | ||
Revision as of 10:53, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 26170733 |
|---|---|
| End of the center position in the TSS region: | 26170734 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | X06989 |
|---|---|
| Distance: | -4 |
| Num_trans: | 47 |
| All_trans: | X06989:-4 ENST00000474136.5:-12 BC004369:-12 ENST00000354192.7:-13 AF282245:-13 BC065529:-17 BC065523:-17 MA353526:27 LF214042:-32 MA449619:-32 ENST00000348990.9:-33 Y00264:-33 AK297412:-33 AK294534:-33 AK298861:-33 ENST00000346798.8:-36 NM_001136129:-36 NM_000484:-36 NM_201414:-36 NM_201413:-36 NM_001204302:-36 NM_001204301:-36 NM_001204303:-36 NM_001136130:-36 NM_001385253:-36 M35675:-36 AK297229:49 AK312326:49 ENST00000357903.7:-53 ENST00000358918.7:66 ENST00000439274.6:79 LF385141:-86 MA620718:-86 HM005315:93 AB384791:108 EU832797:113 GQ129348:113 KJ901289:113 LF213391:258 MA448968:258 LF210650:-326 MA446227:-326 ENST00000359726.7:-394 NM_001136131:-394 LF385472:-394 MA621049:-394 AK296229:-394 |
TATA-Box annotation
| Distance to TSS: | 33 |
|---|---|
| Nearest PromoterID: | NM_001269041 |
| Entrez ID: | 140690 |
| Nearest Unigene: | Hs.131543 |
| Nearest Refseq: | NM_080618 |
| Nearest Ensembl: | ENSG00000124092 |
| Gene Name: | amyloid beta precursor protein |
| Gene Alias: | BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 |
| Gene Description: | CCCTC-binding factor like |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
