Difference between revisions of "TSS:Hg 241053.1"
From referenceTSS
| Line 2: | Line 2: | ||
|aC1= | |aC1= | ||
|all_trans=NR_045586:63 AF318361:63 ENST00000336283.8:-96 AK054960:-154 ENST00000520427.1:479 AF293024:479 AF293025:479 AF293026:479 DQ286291:479 | |all_trans=NR_045586:63 AF318361:63 ENST00000336283.8:-96 AK054960:-154 ENST00000520427.1:479 AF293024:479 AF293025:479 AF293026:479 DQ286291:479 | ||
| − | |chr= | + | |chr=chr5 |
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=63 | |distance=63 | ||
|distance_to_tss=-46 | |distance_to_tss=-46 | ||
| − | |end= | + | |end=140558156 |
|end_of_center_position=140558156 | |end_of_center_position=140558156 | ||
|entrez_id=10141 | |entrez_id=10141 | ||
| Line 25: | Line 25: | ||
|num_trans=9 | |num_trans=9 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=140558155 |
|start_of_center_position=140558155 | |start_of_center_position=140558155 | ||
| − | |strand= | + | |strand=- |
|transcript_name=NR_045586 AF318361 | |transcript_name=NR_045586 AF318361 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_241053.1 | |tss_id=hg_241053.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 11:56, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 140558155 |
|---|---|
| End of the center position in the TSS region: | 140558156 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NR_045586 AF318361 |
|---|---|
| Distance: | 63 |
| Num_trans: | 9 |
| All_trans: | NR_045586:63 AF318361:63 ENST00000336283.8:-96 AK054960:-154 ENST00000520427.1:479 AF293024:479 AF293025:479 AF293026:479 DQ286291:479 |
TATA-Box annotation
| Distance to TSS: | -46 |
|---|---|
| Nearest PromoterID: | NR_126517 |
| Entrez ID: | 10141 |
| Nearest Unigene: | Hs.177972 |
| Nearest Refseq: | NM_005750 |
| Nearest Ensembl: | ENSG00000082929 |
| Gene Name: | steroid receptor RNA activator 1 |
| Gene Alias: | C4orf6|aC1 |
| Gene Description: | long intergenic non-protein coding RNA 1587 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
