Difference between revisions of "TSS:Hg 241139.1"
From referenceTSS
| Line 8: | Line 8: | ||
|SR-BII= | |SR-BII= | ||
|all_trans=ENST00000510197.5:237 NM_001242936:237 uc003hjv.4:237 AK124936:237 ENST00000512895.5:301 uc062xlv.1:301 | |all_trans=ENST00000510197.5:237 NM_001242936:237 uc003hjv.4:237 AK124936:237 ENST00000512895.5:301 uc062xlv.1:301 | ||
| − | |chr= | + | |chr=chr5 |
|cpg_percent=0.175 | |cpg_percent=0.175 | ||
|distance=NA | |distance=NA | ||
|distance_to_tss=23 | |distance_to_tss=23 | ||
| − | |end= | + | |end=153802406 |
|end_of_center_position=153802404 | |end_of_center_position=153802404 | ||
|entrez_id=950 | |entrez_id=950 | ||
| Line 31: | Line 31: | ||
|num_trans=0 | |num_trans=0 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=153802400 |
|start_of_center_position=153802403 | |start_of_center_position=153802403 | ||
| − | |strand= | + | |strand=- |
|transcript_name= | |transcript_name= | ||
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_241139.1 | |tss_id=hg_241139.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q6ZV65 | |uniprot_id=Q6ZV65 | ||
}} | }} | ||
Latest revision as of 11:58, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 153802403 |
|---|---|
| End of the center position in the TSS region: | 153802404 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | ENST00000510197.5:237 NM_001242936:237 uc003hjv.4:237 AK124936:237 ENST00000512895.5:301 uc062xlv.1:301 |
TATA-Box annotation
| Distance to TSS: | 23 |
|---|---|
| Nearest PromoterID: | NM_005506 |
| Entrez ID: | 950 |
| Nearest Unigene: | Hs.349656 |
| Nearest Refseq: | NM_005506 |
| Nearest Ensembl: | ENSG00000138760 |
| Gene Name: | SCARB2 |
| Gene Alias: | AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII |
| Gene Description: | scavenger receptor class B member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.175 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
