Difference between revisions of "TSS:Hg 242191.1"
From referenceTSS
Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|all_trans=ENST00000405218.6:-75 NM_001163147:-145 AK312863:173 BC098403:181 ENST00000405192.6:196 ENST00000430479.6:206 ENST00000433547.1:206 NM_004956:206 NM_001370556:206 AB209202:208 ENST00000483075.1:233 BC106762:460 BC106763:460 | |all_trans=ENST00000405218.6:-75 NM_001163147:-145 AK312863:173 BC098403:181 ENST00000405192.6:196 ENST00000430479.6:206 ENST00000433547.1:206 NM_004956:206 NM_001370556:206 AB209202:208 ENST00000483075.1:233 BC106762:460 BC106763:460 | ||
− | |chr= | + | |chr=chr7 |
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=-75 | |distance=-75 | ||
|distance_to_tss=114942 | |distance_to_tss=114942 | ||
− | |end= | + | |end=13989872 |
|end_of_center_position=13989872 | |end_of_center_position=13989872 | ||
|entrez_id=23294 | |entrez_id=23294 | ||
Line 24: | Line 24: | ||
|num_trans=13 | |num_trans=13 | ||
|species=human | |species=human | ||
− | |start= | + | |start=13989871 |
|start_of_center_position=13989871 | |start_of_center_position=13989871 | ||
− | |strand= | + | |strand=- |
|tata_box=-30(GCCCTTAAAAGG,-,0.00),-29(CCCTTAAAAGGG,+,0.00),-28(CCTTAAAAGGGA,+,0.00) | |tata_box=-30(GCCCTTAAAAGG,-,0.00),-29(CCCTTAAAAGGG,+,0.00),-28(CCTTAAAAGGGA,+,0.00) | ||
|transcript_name=ENST00000405218.6 | |transcript_name=ENST00000405218.6 | ||
− | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_242191.1 | |tss_id=hg_242191.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=P50549 | |uniprot_id=P50549 | ||
}} | }} |
Revision as of 12:22, 14 July 2021
Basic information about the TSS
|
|
Start of the center position in the TSS region: | 13989871 |
---|---|
End of the center position in the TSS region: | 13989872 |
Gene and protein annotation
|
|
Transcript annotation
Transcript_name: | ENST00000405218.6 |
---|---|
Distance: | -75 |
Num_trans: | 13 |
All_trans: | ENST00000405218.6:-75 NM_001163147:-145 AK312863:173 BC098403:181 ENST00000405192.6:196 ENST00000430479.6:206 ENST00000433547.1:206 NM_004956:206 NM_001370556:206 AB209202:208 ENST00000483075.1:233 BC106762:460 BC106763:460 |
TATA-Box annotation
Distance to TSS: | 114942 |
---|---|
Nearest PromoterID: | NM_015245 |
Entrez ID: | 23294 |
Nearest Unigene: | Hs.656492 |
Nearest Refseq: | NM_015245 |
Nearest Ensembl: | ENSG00000064999 |
Gene Name: | ETS variant transcription factor 1 |
Gene Alias: | ANKS1 |
Gene Description: | ankyrin repeat and sterile alpha motif domain containing 1A |
Gene Type: | protein-coding |
CpG%: | 0.03 |
GC%: | 0.542289 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -30(GCCCTTAAAAGG,-,0.00),-29(CCCTTAAAAGGG,+,0.00),-28(CCTTAAAAGGGA,+,0.00) |