Difference between revisions of "TSS:Hg 243230.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|all_trans=AY208841:12 AY208838:14 BC001628:14 AJ565853:-42 AJ565854:-42 AJ565855:-42 AJ575566:-42 AB603741:43 LF354211:58 MA589788:58 ENST00000673211.1:-179 ENST00000672615.1:-179 ENST00000673485.1:-179 ENST00000672476.1:-179 ENST00000673171.1:-179 ENST00000672152.1:-179 AK000164:-179 AY302067:-179 AY302068:-179 AY302069:-179 AY302070:-179 AY302071:-179 AY302072:-179 AY302073:-179 AY302074:-179 | |all_trans=AY208841:12 AY208838:14 BC001628:14 AJ565853:-42 AJ565854:-42 AJ565855:-42 AJ575566:-42 AB603741:43 LF354211:58 MA589788:58 ENST00000673211.1:-179 ENST00000672615.1:-179 ENST00000673485.1:-179 ENST00000672476.1:-179 ENST00000673171.1:-179 ENST00000672152.1:-179 AK000164:-179 AY302067:-179 AY302068:-179 AY302069:-179 AY302070:-179 AY302071:-179 AY302072:-179 AY302073:-179 AY302074:-179 | ||
| − | |chr= | + | |chr=chr9 |
|cpg_percent=0 | |cpg_percent=0 | ||
|distance=12 | |distance=12 | ||
|distance_to_tss=8549 | |distance_to_tss=8549 | ||
| − | |end= | + | |end=32989909 |
|end_of_center_position=32989909 | |end_of_center_position=32989909 | ||
|entrez_id=56260 | |entrez_id=56260 | ||
| Line 24: | Line 24: | ||
|num_trans=25 | |num_trans=25 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=32989908 |
|start_of_center_position=32989908 | |start_of_center_position=32989908 | ||
| − | |strand= | + | |strand=- |
|tata_box=-95(GCTTTTAGGGTG,+,0.00) | |tata_box=-95(GCTTTTAGGGTG,+,0.00) | ||
|transcript_name=AY208841 | |transcript_name=AY208841 | ||
Revision as of 12:46, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 32989908 |
|---|---|
| End of the center position in the TSS region: | 32989909 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AY208841 |
|---|---|
| Distance: | 12 |
| Num_trans: | 25 |
| All_trans: | AY208841:12 AY208838:14 BC001628:14 AJ565853:-42 AJ565854:-42 AJ565855:-42 AJ575566:-42 AB603741:43 LF354211:58 MA589788:58 ENST00000673211.1:-179 ENST00000672615.1:-179 ENST00000673485.1:-179 ENST00000672476.1:-179 ENST00000673171.1:-179 ENST00000672152.1:-179 AK000164:-179 AY302067:-179 AY302068:-179 AY302069:-179 AY302070:-179 AY302071:-179 AY302072:-179 AY302073:-179 AY302074:-179 |
TATA-Box annotation
| Distance to TSS: | 8549 |
|---|---|
| Nearest PromoterID: | NR_161217 |
| Entrez ID: | 56260 |
| Nearest Unigene: | Hs.661238 |
| Nearest Refseq: | NM_019607 |
| Nearest Ensembl: | ENSG00000213865 |
| Gene Name: | aprataxin |
| Gene Alias: | - |
| Gene Description: | chromosome 8 open reading frame 44 |
| Gene Type: | ncRNA |
| CpG%: | 0 |
| GC%: | 0.348259 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -95(GCTTTTAGGGTG,+,0.00) |
