Difference between revisions of "TSS:Hg 243424.1"
From referenceTSS
| Line 3: | Line 3: | ||
|MCPH3= | |MCPH3= | ||
|all_trans=Y17178:54 LF317166:-155 MA552743:-155 Y17180:199 Y17172:232 AJ270690:265 AK129724:-273 AF212044:-317 Y17176:351 Y16707:377 AY326467:-383 Y17173:403 BC016776:-415 BC016827:-415 | |all_trans=Y17178:54 LF317166:-155 MA552743:-155 Y17180:199 Y17172:232 AJ270690:265 AK129724:-273 AF212044:-317 Y17176:351 Y16707:377 AY326467:-383 Y17173:403 BC016776:-415 BC016827:-415 | ||
| − | |chr= | + | |chr=chrM |
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=54 | |distance=54 | ||
|distance_to_tss=132168 | |distance_to_tss=132168 | ||
| − | |end= | + | |end=11343 |
|end_of_center_position=11339 | |end_of_center_position=11339 | ||
|entrez_id=55755 | |entrez_id=55755 | ||
| Line 26: | Line 26: | ||
|num_trans=14 | |num_trans=14 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=11334 |
|start_of_center_position=11338 | |start_of_center_position=11338 | ||
| − | |strand= | + | |strand=+ |
|transcript_name=Y17178 | |transcript_name=Y17178 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_243424.1 | |tss_id=hg_243424.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q5JTU8 | |uniprot_id=Q5JTU8 | ||
}} | }} | ||
Latest revision as of 12:50, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 11338 |
|---|---|
| End of the center position in the TSS region: | 11339 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | Y17178 |
|---|---|
| Distance: | 54 |
| Num_trans: | 14 |
| All_trans: | Y17178:54 LF317166:-155 MA552743:-155 Y17180:199 Y17172:232 AJ270690:265 AK129724:-273 AF212044:-317 Y17176:351 Y16707:377 AY326467:-383 Y17173:403 BC016776:-415 BC016827:-415 |
TATA-Box annotation
| Distance to TSS: | 132168 |
|---|---|
| Nearest PromoterID: | NR_073557 |
| Entrez ID: | 55755 |
| Nearest Unigene: | Hs.269560 |
| Nearest Refseq: | NM_018249 |
| Nearest Ensembl: | ENSG00000136861 |
| Gene Name: | CDK5RAP2 |
| Gene Alias: | C48|Cep215|MCPH3 |
| Gene Description: | CDK5 regulatory subunit associated protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
