Difference between revisions of "TSS:Hg 243427.1"
From referenceTSS
| Line 2: | Line 2: | ||
|MGC:10353= | |MGC:10353= | ||
|all_trans=DQ593292:85 S64650:299 MS906551:-403 MS909357:-403 MP573218:-403 MS906561:-410 MS909367:-410 MS906559:-410 MS906562:-410 MS909365:-410 MS909368:-410 MP573228:-410 MP573226:-410 MP573229:-410 MS906557:-413 MS906560:-413 MS909363:-413 MS909366:-413 MP573224:-413 MP573227:-413 MS906566:-418 MS906567:-418 MS909372:-418 MS909373:-418 MP573233:-418 MP573234:-418 MS906554:-424 MS906558:-424 MS909360:-424 MS909364:-424 MP573221:-424 MP573225:-424 MS906555:-427 MS909361:-427 MP573222:-427 MS906563:-432 MS909369:-432 MP573230:-432 MS906564:-440 MS909370:-440 MP573231:-440 MS906553:-460 MS909359:-460 MP573220:-460 DQ582036:-477 MS906556:-479 MS909362:-479 MP573223:-479 AK026634:493 LF641695:494 LF641696:494 LF641697:494 LQ059297:494 LQ059298:494 LQ059299:494 MA264841:494 MA264842:494 MA264843:494 MS942517:494 MS942518:494 MS942519:494 X51525:495 | |all_trans=DQ593292:85 S64650:299 MS906551:-403 MS909357:-403 MP573218:-403 MS906561:-410 MS909367:-410 MS906559:-410 MS906562:-410 MS909365:-410 MS909368:-410 MP573228:-410 MP573226:-410 MP573229:-410 MS906557:-413 MS906560:-413 MS909363:-413 MS909366:-413 MP573224:-413 MP573227:-413 MS906566:-418 MS906567:-418 MS909372:-418 MS909373:-418 MP573233:-418 MP573234:-418 MS906554:-424 MS906558:-424 MS909360:-424 MS909364:-424 MP573221:-424 MP573225:-424 MS906555:-427 MS909361:-427 MP573222:-427 MS906563:-432 MS909369:-432 MP573230:-432 MS906564:-440 MS909370:-440 MP573231:-440 MS906553:-460 MS909359:-460 MP573220:-460 DQ582036:-477 MS906556:-479 MS909362:-479 MP573223:-479 AK026634:493 LF641695:494 LF641696:494 LF641697:494 LQ059297:494 LQ059298:494 LQ059299:494 MA264841:494 MA264842:494 MA264843:494 MS942517:494 MS942518:494 MS942519:494 X51525:495 | ||
| − | |chr= | + | |chr=chrM |
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=85 | |distance=85 | ||
|distance_to_tss=657 | |distance_to_tss=657 | ||
| − | |end= | + | |end=1177 |
|end_of_center_position=1173 | |end_of_center_position=1173 | ||
|entrez_id=7185 | |entrez_id=7185 | ||
| Line 25: | Line 25: | ||
|num_trans=62 | |num_trans=62 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=1168 |
|start_of_center_position=1172 | |start_of_center_position=1172 | ||
| − | |strand= | + | |strand=+ |
|transcript_name=DQ593292 | |transcript_name=DQ593292 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 12:50, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 1172 |
|---|---|
| End of the center position in the TSS region: | 1173 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | DQ593292 |
|---|---|
| Distance: | 85 |
| Num_trans: | 62 |
| All_trans: | DQ593292:85 S64650:299 MS906551:-403 MS909357:-403 MP573218:-403 MS906561:-410 MS909367:-410 MS906559:-410 MS906562:-410 MS909365:-410 MS909368:-410 MP573228:-410 MP573226:-410 MP573229:-410 MS906557:-413 MS906560:-413 MS909363:-413 MS909366:-413 MP573224:-413 MP573227:-413 MS906566:-418 MS906567:-418 MS909372:-418 MS909373:-418 MP573233:-418 MP573234:-418 MS906554:-424 MS906558:-424 MS909360:-424 MS909364:-424 MP573221:-424 MP573225:-424 MS906555:-427 MS909361:-427 MP573222:-427 MS906563:-432 MS909369:-432 MP573230:-432 MS906564:-440 MS909370:-440 MP573231:-440 MS906553:-460 MS909359:-460 MP573220:-460 DQ582036:-477 MS906556:-479 MS909362:-479 MP573223:-479 AK026634:493 LF641695:494 LF641696:494 LF641697:494 LQ059297:494 LQ059298:494 LQ059299:494 MA264841:494 MA264842:494 MA264843:494 MS942517:494 MS942518:494 MS942519:494 X51525:495 |
TATA-Box annotation
| Distance to TSS: | 657 |
|---|---|
| Nearest PromoterID: | NM_005658 |
| Entrez ID: | 7185 |
| Nearest Unigene: | Hs.531251 |
| Nearest Refseq: | NM_005658 |
| Nearest Ensembl: | ENSG00000056558 |
| Gene Name: | TRAF1 |
| Gene Alias: | EBI6|MGC:10353 |
| Gene Description: | TNF receptor associated factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
