Difference between revisions of "TSS:Hg 243517.1"
From referenceTSS
| Line 3: | Line 3: | ||
|M2-LHX3= | |M2-LHX3= | ||
|all_trans=BC009316:26 AK026170:-194 AB462505:204 DQ593671:-253 BC018865:-407 DQ596276:494 | |all_trans=BC009316:26 AK026170:-194 AB462505:204 DQ593671:-253 BC018865:-407 DQ596276:494 | ||
| − | |chr= | + | |chr=chrM |
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
|distance=26 | |distance=26 | ||
|distance_to_tss=130 | |distance_to_tss=130 | ||
| − | |end= | + | |end=2508 |
|end_of_center_position=2504 | |end_of_center_position=2504 | ||
|entrez_id=8022 | |entrez_id=8022 | ||
| Line 26: | Line 26: | ||
|num_trans=6 | |num_trans=6 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=2499 |
|start_of_center_position=2503 | |start_of_center_position=2503 | ||
| − | |strand= | + | |strand=+ |
|transcript_name=BC009316 | |transcript_name=BC009316 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 12:52, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 2503 |
|---|---|
| End of the center position in the TSS region: | 2504 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC009316 |
|---|---|
| Distance: | 26 |
| Num_trans: | 6 |
| All_trans: | BC009316:26 AK026170:-194 AB462505:204 DQ593671:-253 BC018865:-407 DQ596276:494 |
TATA-Box annotation
| Distance to TSS: | 130 |
|---|---|
| Nearest PromoterID: | NM_014564 |
| Entrez ID: | 8022 |
| Nearest Unigene: | Hs.148427 |
| Nearest Refseq: | NM_014564 |
| Nearest Ensembl: | ENSG00000107187 |
| Gene Name: | LHX3 |
| Gene Alias: | CPHD3|LIM3|M2-LHX3 |
| Gene Description: | LIM homeobox 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
