Difference between revisions of "TSS:Hg 243971.1"
From referenceTSS
| Line 8: | Line 8: | ||
|distance=2 | |distance=2 | ||
|distance_to_tss=4440 | |distance_to_tss=4440 | ||
| − | |end= | + | |end=48802661 |
|end_of_center_position=48802661 | |end_of_center_position=48802661 | ||
|entrez_id=100529097 | |entrez_id=100529097 | ||
| Line 27: | Line 27: | ||
|num_trans=19 | |num_trans=19 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=48802660 |
|start_of_center_position=48802660 | |start_of_center_position=48802660 | ||
| − | |strand= | + | |strand=+ |
|tata_box=34(CTTTTAATAGCC,+,0.00) | |tata_box=34(CTTTTAATAGCC,+,0.00) | ||
|transcript_name=NR_135591 | |transcript_name=NR_135591 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_243971.1 | |tss_id=hg_243971.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 13:02, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 48802660 |
|---|---|
| End of the center position in the TSS region: | 48802661 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NR_135591 |
|---|---|
| Distance: | 2 |
| Num_trans: | 19 |
| All_trans: | NR_135591:2 KJ902051:30 BT006649:32 AB385398:32 AF132609:32 BC013737:50 ENST00000440653.1:-111 ENST00000468949.1:119 AK303012:119 ENST00000443563.5:-146 ENST00000647398.1:227 ENST00000493923.1:247 ENST00000489352.5:-454 AK095124:-468 BC011498:-471 ENST00000643934.1:-474 ENST00000441703.6:-475 ENST00000644068.1:-493 AK295884:-496 |
TATA-Box annotation
| Distance to TSS: | 4440 |
|---|---|
| Nearest PromoterID: | NM_001199974 |
| Entrez ID: | 100529097 |
| Nearest Unigene: | Hs.432485 |
| Nearest Refseq: | NM_001199973 |
| Nearest Ensembl: | |
| Gene Name: | histone deacetylase 6 |
| Gene Alias: | - |
| Gene Description: | RPL36A-HNRNPH2 readthrough |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.393035 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 34(CTTTTAATAGCC,+,0.00) |
