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Difference between revisions of "TSS:Hg 102731.1"

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Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
 
|CAT1=
 
|CAT1=
−
|all_trans=ENST00000680523.1:0 ENST00000318080.7:0 ENST00000455396.2:0 ENST00000681118.1:0 ENST00000679520.1:0 ENST00000681911.1:0 ENST00000681622.1:0 ENST00000680093.1:0 ENST00000681325.1:0 ENST00000681627.1:0 ENST00000681040.1:0 ENST00000680117.1:0 ENST00000458362.5:0 ENST00000681725.1:0 ENST00000415948.6:0 ENST00000441796.1:0 ENST00000393384.3:0 ENST00000455830.2:0 NM_001346546:0 NM_004003:0 NM_000755:0 NM_001346549:0 NM_001346548:0 NM_001257363:0 NM_001346547:0 BC000723:0 AK313931:0 ENST00000681689.1:105 KJ901354:141 BT006801:141 CU674362:141 X78706:146 ENST00000464290.5:-380
+
|all_trans=HGNC:2342
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.105
 
|cpg_percent=0.105
Line 23: Line 23:
 
|nearest_refseq=NM_000755
 
|nearest_refseq=NM_000755
 
|nearest_unigene=Hs.12068
 
|nearest_unigene=Hs.12068
−
|num_trans=33
+
|num_trans=1384
 
|species=human
 
|species=human
 
|start=129110649
 
|start=129110649
 
|start_of_center_position=129110729
 
|start_of_center_position=129110729
 
|strand=-
 
|strand=-
−
|transcript_name=ENST00000680523.1 ENST00000318080.7 ENST00000455396.2 ENST00000681118.1 ENST00000679520.1 ENST00000681911.1 ENST00000681622.1 ENST00000680093.1 ENST00000681325.1 ENST00000681627.1 ENST00000681040.1 ENST00000680117.1 ENST00000458362.5 ENST00000681725.1 ENST00000415948.6 ENST00000441796.1 ENST00000393384.3 ENST00000455830.2 NM_001346546 NM_004003 NM_000755 NM_001346549 NM_001346548 NM_001257363 NM_001346547 BC000723 AK313931
+
|transcript_name=ENST00000680523.1 ENST00000318080.7 ENST00000455396.2 ENST00000681118.1 ENST00000679520.1 ENST00000681911.1 ENST00000681622.1 ENST00000680093.1 ENST00000681325.1 ENST00000681627.1 ENST00000681040.1 ENST00000680117.1 ENST00000458362.5 ENST00000681725.1 ENST00000415948.6 ENST00000441796.1 ENST00000393384.3 ENST00000455830.2 BC000723 AK313931
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_102731.1
 
|tss_id=hg_102731.1

Latest revision as of 18:33, 19 July 2021

Basic information about the TSS

TSS ID:hg_102731.1
Species:human
Chr:chr9
TSS Classification:yes
Start:129110649
End:129110809
Strand:-
TSS Score:1
Start of the center position in the TSS region:129110729
End of the center position in the TSS region:129110730



Gene and protein annotation

Transcript_name:ENST00000680523.1 ENST00000318080.7 ENST00000455396.2 ENST00000681118.1 ENST00000679520.1 ENST00000681911.1 ENST00000681622.1 ENST00000680093.1 ENST00000681325.1 ENST00000681627.1 ENST00000681040.1 ENST00000680117.1 ENST00000458362.5 ENST00000681725.1 ENST00000415948.6 ENST00000441796.1 ENST00000393384.3 ENST00000455830.2 BC000723 AK313931
Distance:0
GeneID:1384
HGNC/MGI_ID:HGNC:2342
UniProt_ID:A6PVN3 B7ZBP5 F2Z2C5 H0Y4Z7 H7C0E1 P43155
Gene_name:carnitine O-acetyltransferase
Gene_symbol:CRAT
Gene_synonyms:CAT1
Gene_source:HGNC:2342



Transcript annotation

Transcript_name:ENST00000680523.1 ENST00000318080.7 ENST00000455396.2 ENST00000681118.1 ENST00000679520.1 ENST00000681911.1 ENST00000681622.1 ENST00000680093.1 ENST00000681325.1 ENST00000681627.1 ENST00000681040.1 ENST00000680117.1 ENST00000458362.5 ENST00000681725.1 ENST00000415948.6 ENST00000441796.1 ENST00000393384.3 ENST00000455830.2 BC000723 AK313931
Distance:0
Num_trans:1384
All_trans:HGNC:2342



TATA-Box annotation

Distance to TSS:64
Nearest PromoterID:NM_001346549
Entrez ID:1384
Nearest Unigene:Hs.12068
Nearest Refseq:NM_000755
Nearest Ensembl:ENSG00000095321
Gene Name:carnitine O-acetyltransferase
Gene Alias:CAT|CAT1|NBIA8
Gene Description:carnitine O-acetyltransferase
Gene Type:protein-coding
CpG%:0.105
GC%:0.761194
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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