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Difference between revisions of "TSS:Hg 109454.1"

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{{TSSDetail
 
{{TSSDetail
|all_trans=ENST00000470220.5:48 ENST00000503444.1:-71 ENST00000468840.6:-144 NM_001347847:-144 NM_001347845:-144 NM_001347844:-144 NM_001347843:-144 NM_001347848:-144 NM_001143773:-144 NM_001347846:-144 AK299924:-144 ENST00000618427.4:155 ENST00000611933.4:155 NM_001001971:155 NM_001166698:155 NM_001347850:155 NM_001347851:155 NM_001347852:155 NM_001347849:155 BC064431:155 ENST00000622363.4:159 AK316542:159 ENST00000621119.4:185 BC036453:199 ENST00000618804.5:200 NM_198215:200 ENST00000614220.4:202 ENST00000619059.4:227 AK289796:229 AK294805:240 ENST00000435852.6:241 ENST00000422313.6:289 KJ895852:289 KJ900467:289 DQ894404:289 EU176262:289 CU687880:289 ENST00000512919.5:-422 NM_001347842:-422 NM_001347840:-422
+
|all_trans=HGNC:19371
 
|chr=chr10
 
|chr=chr10
 
|cpg_percent=0.09
 
|cpg_percent=0.09
Line 22: Line 22:
 
|nearest_refseq=NM_198215
 
|nearest_refseq=NM_198215
 
|nearest_unigene=Hs.607594
 
|nearest_unigene=Hs.607594
|num_trans=40
+
|num_trans=220965
 
|species=human
 
|species=human
 
|start=59362748
 
|start=59362748

Latest revision as of 20:58, 19 July 2021

Basic information about the TSS


TSS ID:hg_109454.1
Species:human
Chr:chr10
TSS Classification:yes
Start:59362748
End:59362759
Strand:-
TSS Score:1
Start of the center position in the TSS region:59362753
End of the center position in the TSS region:59362754



Gene and protein annotation


Transcript_name:ENST00000470220.5
Distance:48
GeneID:220965
HGNC/MGI_ID:HGNC:19371
UniProt_ID:
Gene_name:family with sequence similarity 13 member C
Gene_symbol:FAM13C
Gene_synonyms:
Gene_source:HGNC:19371



Transcript annotation


Transcript_name:ENST00000470220.5
Distance:48
Num_trans:220965
All_trans:HGNC:19371



TATA-Box annotation


Distance to TSS:149
Nearest PromoterID:NM_001347847
Entrez ID:220965
Nearest Unigene:Hs.607594
Nearest Refseq:NM_198215
Nearest Ensembl:ENSG00000148541
Gene Name:family with sequence similarity 13 member C
Gene Alias:FAM13C1
Gene Description:family with sequence similarity 13 member C
Gene Type:protein-coding
CpG%:0.09
GC%:0.696517
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):