Difference between revisions of "TSS:Hg 118386.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|TRIM5alpha= | |TRIM5alpha= | ||
| − | |all_trans= | + | |all_trans=HGNC:16276 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_033034 | |nearest_refseq=NM_033034 | ||
|nearest_unigene=Hs.125300 | |nearest_unigene=Hs.125300 | ||
| − | |num_trans= | + | |num_trans=85363 |
|species=human | |species=human | ||
|start=5685009 | |start=5685009 | ||
|start_of_center_position=5685061 | |start_of_center_position=5685061 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000380034.8 ENST00000396847.7 ENST00000419850.1 | + | |transcript_name=ENST00000380034.8 ENST00000396847.7 ENST00000419850.1 AK027593 BX647152 BC021258 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_118386.1 | |tss_id=hg_118386.1 | ||
Latest revision as of 00:13, 20 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 5685061 |
|---|---|
| End of the center position in the TSS region: | 5685062 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000380034.8 ENST00000396847.7 ENST00000419850.1 AK027593 BX647152 BC021258 |
|---|---|
| Distance: | 0 |
| Num_trans: | 85363 |
| All_trans: | HGNC:16276 |
TATA-Box annotation
| Distance to TSS: | 12 |
|---|---|
| Nearest PromoterID: | NM_033093 |
| Entrez ID: | 85363 |
| Nearest Unigene: | Hs.125300 |
| Nearest Refseq: | NM_033034 |
| Nearest Ensembl: | ENSG00000132256 |
| Gene Name: | tripartite motif containing 5 |
| Gene Alias: | RNF88|TRIM5alpha |
| Gene Description: | tripartite motif containing 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
