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Difference between revisions of "TSS:Hg 226398.1"

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Line 2: Line 2:
 
|SMAP-8=
 
|SMAP-8=
 
|SMAP8=
 
|SMAP8=
−
|all_trans=AB385436:4 AM393094:4 AM393323:4 KU178760:4 KU178761:4 KJ903114:4 AF308608:-50 BC001527:-51 AB033006:-53 AL136584:-53 BC011795:-55 ENST00000568424.1:-64 ENST00000562731.5:-65 ENST00000566585.5:-65 ENST00000564960.1:-65 ENST00000563317.5:-67 ENST00000568464.5:-67 ENST00000563022.5:-67 ENST00000562930.5:-67 ENST00000563978.5:-67 ENST00000569923.5:-67 ENST00000356752.8:-67 ENST00000563799.5:-67 ENST00000562999.5:-67 ENST00000570248.5:-67 NM_001242836:-67 NM_001242835:-67 NR_040072:-67 NM_001242834:-67 NM_001378347:-67 NM_001378344:-67 NM_001242833:-67 AK296415:-67 AK316089:-67 AK299949:-67 AK131248:-67 AB044944:-67 AB044945:-67 AK055038:-68 ENST00000568640.5:-103 ENST00000565088.5:-120 ENST00000566192.5:-163
+
|all_trans=HGNC:14466
 
|chr=chr16
 
|chr=chr16
 
|cpg_percent=0.05
 
|cpg_percent=0.05
Line 24: Line 24:
 
|nearest_refseq=NM_020465
 
|nearest_refseq=NM_020465
 
|nearest_unigene=Hs.322430
 
|nearest_unigene=Hs.322430
−
|num_trans=42
+
|num_trans=65009
 
|species=human
 
|species=human
 
|start=58500209
 
|start=58500209
 
|start_of_center_position=58500227
 
|start_of_center_position=58500227
 
|strand=+
 
|strand=+
−
|transcript_name=AB385436 AM393094 AM393323 KU178760 KU178761 KJ903114
+
|transcript_name=AB385436 AM393094 AM393323 KU178760 KU178761
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_226398.1
 
|tss_id=hg_226398.1

Latest revision as of 09:03, 21 July 2021

Basic information about the TSS

TSS ID:hg_226398.1
Species:human
Chr:chr16
TSS Classification:yes
Start:58500209
End:58500245
Strand:+
TSS Score:1
Start of the center position in the TSS region:58500227
End of the center position in the TSS region:58500228



Gene and protein annotation

Transcript_name:AB385436 AM393094 AM393323 KU178760 KU178761
Distance:4
GeneID:65009
HGNC/MGI_ID:HGNC:14466
UniProt_ID:A0A0S2Z5L7
Gene_name:NDRG family member 4
Gene_symbol:NDRG4
Gene_synonyms:KIAA1180 SMAP-8
Gene_source:HGNC:14466



Transcript annotation

Transcript_name:AB385436 AM393094 AM393323 KU178760 KU178761
Distance:4
Num_trans:65009
All_trans:HGNC:14466



TATA-Box annotation

Distance to TSS:84
Nearest PromoterID:NM_001242836
Entrez ID:65009
Nearest Unigene:Hs.322430
Nearest Refseq:NM_020465
Nearest Ensembl:ENSG00000103034
Gene Name:NDRG family member 4
Gene Alias:BDM1|SMAP-8|SMAP8
Gene Description:NDRG family member 4
Gene Type:protein-coding
CpG%:0.05
GC%:0.646766
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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