Difference between revisions of "TSS:Hg 234784.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:8556 |
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_148221 | |nearest_refseq=NR_148221 | ||
|nearest_unigene=Hs.134728 | |nearest_unigene=Hs.134728 | ||
| − | |num_trans= | + | |num_trans=5042 |
|species=human | |species=human | ||
|start=25095994 | |start=25095994 | ||
| Line 28: | Line 28: | ||
|strand=+ | |strand=+ | ||
|tata_box=71(CCTTTTATGTAA,+,0.00) | |tata_box=71(CCTTTTATGTAA,+,0.00) | ||
| − | |transcript_name=ENST00000281589.5 | + | |transcript_name=ENST00000281589.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_234784.1 | |tss_id=hg_234784.1 | ||
Latest revision as of 12:01, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 25095994 |
|---|---|
| End of the center position in the TSS region: | 25095995 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000281589.5 |
|---|---|
| Distance: | 141 |
| Num_trans: | 5042 |
| All_trans: | HGNC:8556 |
TATA-Box annotation
| Distance to TSS: | 27501 |
|---|---|
| Nearest PromoterID: | NR_148221 |
| Entrez ID: | 105370361 |
| Nearest Unigene: | Hs.134728 |
| Nearest Refseq: | NR_148221 |
| Nearest Ensembl: | |
| Gene Name: | poly(A) binding protein cytoplasmic 3 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC105370361 |
| Gene Type: | ncRNA |
| CpG%: | 0.03 |
| GC%: | 0.432836 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 71(CCTTTTATGTAA,+,0.00) |
