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Difference between revisions of "TSS:Mm 100731.1"

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{{TSSDetail
 
{{TSSDetail
 
|Tcn-2=
 
|Tcn-2=
|all_trans=ENSMUST00000020710.10:-14 NM_001130459:16 AK143761:16 ENSMUST00000109990.7:17 AK161618:-29 AK147176:-33 AK133707:-61 ENSMUST00000109989.9:-63 NM_015749:-63 AK170401:-84 ENSMUST00000109991.7:-97 NM_001130458:-97 ENSMUST00000109988.1:173 ENSMUST00000109993.8:-178 ENSMUST00000109992.7:188 AF090686:394 AK196753:401 AK197212:401
+
|all_trans=MGI:98534
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.035
 
|cpg_percent=0.035
Line 23: Line 23:
 
|nearest_refseq=NM_015749
 
|nearest_refseq=NM_015749
 
|nearest_unigene=Mm.20948
 
|nearest_unigene=Mm.20948
|num_trans=18
+
|num_trans=21452
 
|species=mouse
 
|species=mouse
 
|start=3931976
 
|start=3931976

Latest revision as of 10:44, 26 July 2021

Basic information about the TSS


TSS ID:mm_100731.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:3931976
End:3931981
Strand:-
TSS Score:1
Start of the center position in the TSS region:3931978
End of the center position in the TSS region:3931979



Gene and protein annotation


Transcript_name:ENSMUST00000020710.10
Distance:-14
GeneID:21452
HGNC/MGI_ID:MGI:98534
UniProt_ID:O88968
Gene_name:transcobalamin 2
Gene_symbol:Tcn2
Gene_synonyms:Tcn-2
Gene_source:MGI:98534



Transcript annotation


Transcript_name:ENSMUST00000020710.10
Distance:-14
Num_trans:21452
All_trans:MGI:98534



TATA-Box annotation


Distance to TSS:-18
Nearest PromoterID:NM_001130459
Entrez ID:21452
Nearest Unigene:Mm.20948
Nearest Refseq:NM_015749
Nearest Ensembl:ENSMUSG00000020432
Gene Name:transcobalamin 2
Gene Alias:AW208754|Tcn-2
Gene Description:transcobalamin 2
Gene Type:protein-coding
CpG%:0.035
GC%:0.597015
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):