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Difference between revisions of "TSS:Mm 100915.1"

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Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
 
|AI326346=
 
|AI326346=
|all_trans=AK186607:5 AK204643:248 AK182125:-352 NM_134020:-378 BC023041:-378 AK078425:-388 AF368921:-400 ENSMUST00000132147.2:-406 AK158876:-410 ENSMUST00000004508.12:-411 ENSMUST00000130621.1:-411
+
|all_trans=MGI:1915070
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.04
 
|cpg_percent=0.04
Line 23: Line 23:
 
|nearest_refseq=NM_134020
 
|nearest_refseq=NM_134020
 
|nearest_unigene=Mm.254495
 
|nearest_unigene=Mm.254495
|num_trans=11
+
|num_trans=103694
 
|species=mouse
 
|species=mouse
 
|start=6274440
 
|start=6274440

Latest revision as of 10:49, 26 July 2021

Basic information about the TSS


TSS ID:mm_100915.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:6274440
End:6274459
Strand:-
TSS Score:1
Start of the center position in the TSS region:6274449
End of the center position in the TSS region:6274450



Gene and protein annotation


Transcript_name:AK186607
Distance:5
GeneID:103694
HGNC/MGI_ID:MGI:1915070
UniProt_ID:
Gene_name:transmembrane p24 trafficking protein 4
Gene_symbol:Tmed4
Gene_synonyms:1110014L17Rik
Gene_source:MGI:1915070



Transcript annotation


Transcript_name:AK186607
Distance:5
Num_trans:103694
All_trans:MGI:1915070



TATA-Box annotation


Distance to TSS:387
Nearest PromoterID:NM_134020
Entrez ID:103694
Nearest Unigene:Mm.254495
Nearest Refseq:NM_134020
Nearest Ensembl:ENSMUSG00000004394
Gene Name:transmembrane p24 trafficking protein 4
Gene Alias:1110014L17Rik|AI326346
Gene Description:transmembrane p24 trafficking protein 4
Gene Type:protein-coding
CpG%:0.04
GC%:0.59204
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):