Difference between revisions of "TSS:Mm 101273.1"
From referenceTSS
| Line 29: | Line 29: | ||
|strand=- | |strand=- | ||
|tata_box=-46(GGCTATTTATGG,-,0.00),-44(CTATTTATGGGC,+,0.00) | |tata_box=-46(GGCTATTTATGG,-,0.00),-44(CTATTTATGGGC,+,0.00) | ||
| − | |transcript_name=NM_139297 | + | |transcript_name=NM_139297.6 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101273.1 | |tss_id=mm_101273.1 | ||
Latest revision as of 10:56, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 21370669 |
|---|---|
| End of the center position in the TSS region: | 21370670 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_139297.6 |
|---|---|
| Distance: | 38 |
| Num_trans: | 12 |
| All_trans: | NM_139297:38 AK185393:142 BC061208:154 AK209798:187 AK196595:188 AK197624:188 ENSMUST00000102875.10:190 AF424698:190 AK033445:192 AK177085:407 AK214438:407 AK213550:-495 |
TATA-Box annotation
| Distance to TSS: | -41 |
|---|---|
| Nearest PromoterID: | NM_139297 |
| Entrez ID: | 216558 |
| Nearest Unigene: | Mm.28877 |
| Nearest Refseq: | NM_139297 |
| Nearest Ensembl: | ENSMUSG00000001891 |
| Gene Name: | UDP-glucose pyrophosphorylase 2 |
| Gene Alias: | UDPGP|UGPase |
| Gene Description: | UDP-glucose pyrophosphorylase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -46(GGCTATTTATGG,-,0.00),-44(CTATTTATGGGC,+,0.00) |
