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Difference between revisions of "TSS:Mm 101724.1"

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{{TSSDetail
 
{{TSSDetail
|all_trans=ENSMUST00000169305.2:54 AK142450:54 M63436:-78 BC132331:-86 BC137733:-89 M86566:214 AK141596:-269 AK039496:302 NM_001359035:316 X61430:327 ENSMUST00000205546.1:351 ENSMUST00000206085.1:-390 ENSMUST00000020707.11:-410 ENSMUST00000207274.1:410 ENSMUST00000132971.2:-410 NM_010250:-410 AK034095:-410
+
|all_trans=MGI:95613
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.035
 
|cpg_percent=0.035
Line 22: Line 22:
 
|nearest_refseq=NM_010250
 
|nearest_refseq=NM_010250
 
|nearest_unigene=Mm.439668
 
|nearest_unigene=Mm.439668
|num_trans=17
+
|num_trans=14394
 
|species=mouse
 
|species=mouse
 
|start=42182513
 
|start=42182513

Latest revision as of 11:06, 26 July 2021

Basic information about the TSS


TSS ID:mm_101724.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:42182513
End:42182520
Strand:-
TSS Score:1
Start of the center position in the TSS region:42182516
End of the center position in the TSS region:42182517



Gene and protein annotation


Transcript_name:ENSMUST00000169305.2 AK142450
Distance:54
GeneID:14394
HGNC/MGI_ID:MGI:95613
UniProt_ID:
Gene_name:gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
Gene_symbol:Gabra1
Gene_synonyms:GABAAR_alpha1 GABAA_alpha_1 Gabra-1
Gene_source:MGI:95613



Transcript annotation


Transcript_name:ENSMUST00000169305.2 AK142450
Distance:54
Num_trans:14394
All_trans:MGI:95613



TATA-Box annotation


Distance to TSS:-319
Nearest PromoterID:NM_001359035
Entrez ID:14394
Nearest Unigene:Mm.439668
Nearest Refseq:NM_010250
Nearest Ensembl:ENSMUSG00000010803
Gene Name:gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
Gene Alias:GABAA-alpha1|GABAAR-alpha1|Gabra-1
Gene Description:gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
Gene Type:protein-coding
CpG%:0.035
GC%:0.472637
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):