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Difference between revisions of "TSS:Mm 140548.1"

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{{TSSDetail
 
{{TSSDetail
|all_trans=ENSMUST00000231794.1:40 BC110284:80 AK076872:365 ENSMUST00000024572.9:366 NM_001083945:366 AK006083:366 AK016473:404 AK161285:404 AK177506:415 AK005904:422 ENSMUST00000232602.1:441
+
|all_trans=MGI:3630308
 
|chr=chr17
 
|chr=chr17
 
|cpg_percent=0.09
 
|cpg_percent=0.09
Line 22: Line 22:
 
|nearest_refseq=NM_001083945
 
|nearest_refseq=NM_001083945
 
|nearest_unigene=Mm.29830
 
|nearest_unigene=Mm.29830
|num_trans=11
+
|num_trans=100037282
 
|species=mouse
 
|species=mouse
 
|start=6948721
 
|start=6948721

Latest revision as of 01:18, 27 July 2021

Basic information about the TSS


TSS ID:mm_140548.1
Species:mouse
Chr:chr17
TSS Classification:yes
Start:6948721
End:6948745
Strand:-
TSS Score:1
Start of the center position in the TSS region:6948733
End of the center position in the TSS region:6948734



Gene and protein annotation


Transcript_name:ENSMUST00000231794.1
Distance:40
GeneID:100037282
HGNC/MGI_ID:MGI:3630308
UniProt_ID:A0A338P734
Gene_name:radial spoke 3B homolog (Chlamydomonas)
Gene_symbol:Rsph3b
Gene_synonyms:Rshl2b
Gene_source:MGI:3630308



Transcript annotation


Transcript_name:ENSMUST00000231794.1
Distance:40
Num_trans:100037282
All_trans:MGI:3630308



TATA-Box annotation


Distance to TSS:-377
Nearest PromoterID:NM_001083945
Entrez ID:100037282
Nearest Unigene:Mm.29830
Nearest Refseq:NM_001083945
Nearest Ensembl:ENSMUSG00000023806
Gene Name:radial spoke 3B homolog (Chlamydomonas)
Gene Alias:Rshl2b
Gene Description:radial spoke 3B homolog (Chlamydomonas)
Gene Type:protein-coding
CpG%:0.09
GC%:0.696517
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):