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Difference between revisions of "TSS:Mm 163270.1"

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{{TSSDetail
 
{{TSSDetail
|all_trans=BC140976:-2 ENSMUST00000156230.1:-18 AK049868:-18 AK167098:-37 AK171457:-42 AK040894:-44 AK155041:-57 ENSMUST00000135536.7:-58 AK171314:-58 AK131112:-59 ENSMUST00000100235.8:-82 ENSMUST00000061450.6:-82 NM_001033393:-82
+
|all_trans=MGI:2444222
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.07
 
|cpg_percent=0.07
Line 23: Line 23:
 
|nearest_refseq=NM_001033393
 
|nearest_refseq=NM_001033393
 
|nearest_unigene=Mm.260587
 
|nearest_unigene=Mm.260587
|num_trans=13
+
|num_trans=320534
 
|species=mouse
 
|species=mouse
 
|start=115187568
 
|start=115187568

Latest revision as of 09:40, 27 July 2021

Basic information about the TSS


TSS ID:mm_163270.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:115187568
End:115187571
Strand:+
TSS Score:1
Start of the center position in the TSS region:115187569
End of the center position in the TSS region:115187570



Gene and protein annotation


Transcript_name:BC140976
Distance:-2
GeneID:320534
HGNC/MGI_ID:MGI:2444222
UniProt_ID:B2RU54
Gene_name:transmembrane protein 104
Gene_symbol:Tmem104
Gene_synonyms:C630005D06Rik
Gene_source:MGI:2444222



Transcript annotation


Transcript_name:BC140976
Distance:-2
Num_trans:320534
All_trans:MGI:2444222



TATA-Box annotation


Distance to TSS:83
Nearest PromoterID:NM_001033393
Entrez ID:320534
Nearest Unigene:Mm.260587
Nearest Refseq:NM_001033393
Nearest Ensembl:ENSMUSG00000045980
Gene Name:transmembrane protein 104
Gene Alias:C630005D06Rik|mFLJ00021
Gene Description:transmembrane protein 104
Gene Type:protein-coding
CpG%:0.07
GC%:0.666667
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):