Difference between revisions of "TSS:Mm 99405.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:2387601 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_153544 | |nearest_refseq=NM_153544 | ||
|nearest_unigene=Mm.247335 | |nearest_unigene=Mm.247335 | ||
| − | |num_trans= | + | |num_trans=217216 |
|species=mouse | |species=mouse | ||
|start=102248842 | |start=102248842 | ||
| Line 28: | Line 28: | ||
|strand=+ | |strand=+ | ||
|tata_box=-86(TTCCCTTTAAGG,-,0.00),-84(CCCTTTAAGGCT,+,0.00),-83(CCTTTAAGGCTG,+,0.00),-16(TTCCCTTTAAGG,-,0.00),-15(TCCCTTTAAGGG,-,0.00),-14(CCCTTTAAGGGG,+,0.00),-14(CCCTTTAAGGGG,-,0.00),-13(CCTTTAAGGGGG,+,0.00),78(CGGTCTTAAAGA,-,0.00) | |tata_box=-86(TTCCCTTTAAGG,-,0.00),-84(CCCTTTAAGGCT,+,0.00),-83(CCTTTAAGGCTG,+,0.00),-16(TTCCCTTTAAGG,-,0.00),-15(TCCCTTTAAGGG,-,0.00),-14(CCCTTTAAGGGG,+,0.00),-14(CCCTTTAAGGGG,-,0.00),-13(CCTTTAAGGGGG,+,0.00),78(CGGTCTTAAAGA,-,0.00) | ||
| − | |transcript_name=ENSMUST00000133930.7 ENSMUST00000100392.4 | + | |transcript_name=ENSMUST00000133930.7 ENSMUST00000100392.4 AK029811 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99405.1 | |tss_id=mm_99405.1 | ||
Latest revision as of 19:25, 28 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 102248865 |
|---|---|
| End of the center position in the TSS region: | 102248866 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000133930.7 ENSMUST00000100392.4 AK029811 |
|---|---|
| Distance: | 0 |
| Num_trans: | 217216 |
| All_trans: | MGI:2387601 |
TATA-Box annotation
| Distance to TSS: | -17 |
|---|---|
| Nearest PromoterID: | NM_153544 |
| Entrez ID: | 217216 |
| Nearest Unigene: | Mm.247335 |
| Nearest Refseq: | NM_153544 |
| Nearest Ensembl: | ENSMUSG00000034773 |
| Gene Name: | homologous recombination factor with OB-fold |
| Gene Alias: | - |
| Gene Description: | cDNA sequence BC030867 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -86(TTCCCTTTAAGG,-,0.00),-84(CCCTTTAAGGCT,+,0.00),-83(CCTTTAAGGCTG,+,0.00),-16(TTCCCTTTAAGG,-,0.00),-15(TCCCTTTAAGGG,-,0.00),-14(CCCTTTAAGGGG,+,0.00),-14(CCCTTTAAGGGG,-,0.00),-13(CCTTTAAGGGGG,+,0.00),78(CGGTCTTAAAGA,-,0.00) |
