Difference between revisions of "TSS:Mm 9941.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:97772 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| − | |distance= | + | |distance=108 |
|distance_to_tss=-147 | |distance_to_tss=-147 | ||
|end=190170832 | |end=190170832 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_008937 | |nearest_refseq=NM_008937 | ||
|nearest_unigene=Mm.132579 | |nearest_unigene=Mm.132579 | ||
| − | |num_trans= | + | |num_trans=19130 |
|species=mouse | |species=mouse | ||
|start=190170821 | |start=190170821 | ||
| Line 28: | Line 28: | ||
|strand=- | |strand=- | ||
|tata_box="-37(CCTTTTATATAT,+,0.00)" | |tata_box="-37(CCTTTTATATAT,+,0.00)" | ||
| − | |transcript_name= | + | |transcript_name=ENSMUST00000175916.7 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_9941.1 | |tss_id=mm_9941.1 | ||
Latest revision as of 19:25, 28 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 190170826 |
|---|---|
| End of the center position in the TSS region: | 190170827 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000175916.7 |
|---|---|
| Distance: | 108 |
| Num_trans: | 19130 |
| All_trans: | MGI:97772 |
TATA-Box annotation
| Distance to TSS: | -147 |
|---|---|
| Nearest PromoterID: | NM_008937 |
| Entrez ID: | 19130 |
| Nearest Unigene: | Mm.132579 |
| Nearest Refseq: | NM_008937 |
| Nearest Ensembl: | ENSMUSG00000010175 |
| Gene Name: | prospero homeobox 1 |
| Gene Alias: | A230003G05Rik |
| Gene Description: | prospero homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-37(CCTTTTATATAT,+,0.00)" |
