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Difference between revisions of "TSS:Mm 99423.1"

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Line 2: Line 2:
 
|Rap2ip=
 
|Rap2ip=
 
|Rpip8=
 
|Rpip8=
|all_trans=BC046319:7 ENSMUST00000107105.8:-17 ENSMUST00000107102.7:-17 ENSMUST00000107103.7:-17 ENSMUST00000006750.7:-17 NM_016759:-17 NM_001252347:-17 NM_001362804:-17 NM_001362803:-17 LF198922:-18 MA434499:-18 U73941:180
+
|all_trans=MGI:1858752
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.095
 
|cpg_percent=0.095
Line 24: Line 24:
 
|nearest_refseq=NM_016759
 
|nearest_refseq=NM_016759
 
|nearest_unigene=Mm.2560
 
|nearest_unigene=Mm.2560
|num_trans=12
+
|num_trans=51799
 
|species=mouse
 
|species=mouse
 
|start=102393419
 
|start=102393419

Latest revision as of 19:25, 28 July 2021

Basic information about the TSS


TSS ID:mm_99423.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:102393419
End:102393496
Strand:+
TSS Score:1
Start of the center position in the TSS region:102393457
End of the center position in the TSS region:102393458



Gene and protein annotation


Transcript_name:BC046319
Distance:7
GeneID:51799
HGNC/MGI_ID:MGI:1858752
UniProt_ID:
Gene_name:RUN domain containing 3A
Gene_symbol:Rundc3a
Gene_synonyms:Rap2ip Rpip8
Gene_source:MGI:1858752



Transcript annotation


Transcript_name:BC046319
Distance:7
Num_trans:51799
All_trans:MGI:1858752



TATA-Box annotation


Distance to TSS:55
Nearest PromoterID:NM_001362804
Entrez ID:51799
Nearest Unigene:Mm.2560
Nearest Refseq:NM_016759
Nearest Ensembl:ENSMUSG00000006575
Gene Name:RUN domain containing 3A
Gene Alias:RPIP-8|Rap2ip|Rpip8
Gene Description:RUN domain containing 3A
Gene Type:protein-coding
CpG%:0.095
GC%:0.726368
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):