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Difference between revisions of "TSS:Mm 99427.1"

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{{TSSDetail
 
{{TSSDetail
|all_trans=ENSMUST00000132876.1:32 ENSMUST00000131219.1:-60 LF230886:-110 MA466463:-110 LF230887:132 MA466464:132 LF230885:-190 MA466462:-190 ENSMUST00000142157.7:-252 LF230884:-435 MA466461:-435
+
|all_trans=MGI:1858752
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.085
 
|cpg_percent=0.085
Line 23: Line 23:
 
|nearest_refseq=NR_105895
 
|nearest_refseq=NR_105895
 
|nearest_unigene=
 
|nearest_unigene=
|num_trans=11
+
|num_trans=51799
 
|species=mouse
 
|species=mouse
 
|start=102399815
 
|start=102399815

Latest revision as of 19:26, 28 July 2021

Basic information about the TSS


TSS ID:mm_99427.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:102399815
End:102399826
Strand:+
TSS Score:1
Start of the center position in the TSS region:102399820
End of the center position in the TSS region:102399821



Gene and protein annotation


Transcript_name:ENSMUST00000132876.1
Distance:32
GeneID:51799
HGNC/MGI_ID:MGI:1858752
UniProt_ID:
Gene_name:RUN domain containing 3A
Gene_symbol:Rundc3a
Gene_synonyms:Rap2ip Rpip8
Gene_source:MGI:1858752



Transcript annotation


Transcript_name:ENSMUST00000132876.1
Distance:32
Num_trans:51799
All_trans:MGI:1858752



TATA-Box annotation


Distance to TSS:5166
Nearest PromoterID:NR_105895
Entrez ID:102465561
Nearest Unigene:
Nearest Refseq:NR_105895
Nearest Ensembl:ENSMUSG00000098774
Gene Name:RUN domain containing 3A
Gene Alias:Gm27436|mmu-mir-6930
Gene Description:microRNA 6930
Gene Type:ncRNA
CpG%:0.085
GC%:0.681592
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):