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Difference between revisions of "TSS:Mm 99451.1"

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{{TSSDetail
 
{{TSSDetail
|all_trans=AK193719:-2 AK219696:7 AK211032:18 ENSMUST00000138451.1:-59 ENSMUST00000176953.1:-62 ENSMUST00000148580.1:-229 AK182648:263
+
|all_trans=MGI:95832
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.025
 
|cpg_percent=0.025
Line 23: Line 23:
 
|nearest_refseq=NM_008175
 
|nearest_refseq=NM_008175
 
|nearest_unigene=Mm.1568
 
|nearest_unigene=Mm.1568
|num_trans=7
+
|num_trans=14824
 
|species=mouse
 
|species=mouse
 
|start=102434160
 
|start=102434160

Latest revision as of 19:26, 28 July 2021

Basic information about the TSS


TSS ID:mm_99451.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:102434160
End:102434171
Strand:+
TSS Score:1
Start of the center position in the TSS region:102434165
End of the center position in the TSS region:102434166



Gene and protein annotation


Transcript_name:AK193719
Distance:-2
GeneID:14824
HGNC/MGI_ID:MGI:95832
UniProt_ID:
Gene_name:granulin
Gene_symbol:Grn
Gene_synonyms:PC_cell-derived_growth_factor Pgrn acrogranulin epithelin progranulin
Gene_source:MGI:95832



Transcript annotation


Transcript_name:AK193719
Distance:-2
Num_trans:14824
All_trans:MGI:95832



TATA-Box annotation


Distance to TSS:3659
Nearest PromoterID:NM_008175
Entrez ID:14824
Nearest Unigene:Mm.1568
Nearest Refseq:NM_008175
Nearest Ensembl:ENSMUSG00000034708
Gene Name:granulin
Gene Alias:GP88|PCDGF|PEPI|Pgrn|epithelin
Gene Description:granulin
Gene Type:protein-coding
CpG%:0.025
GC%:0.557214
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):