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Difference between revisions of "TSS:Mm 99458.1"

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{{TSSDetail
 
{{TSSDetail
|all_trans=AK204596:40 AK204598:40 AK212296:169 LF230897:185 MA466474:185 ENSMUST00000125819.8:210 ENSMUST00000127530.2:231 LF230898:264 MA466475:264 AK181447:294 AK184964:294 AK187351:294 AK188116:294 AK190913:294 LF230896:-329 MA466473:-329 ENSMUST00000177428.1:341 ENSMUST00000123500.2:-344
+
|all_trans=MGI:95832
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.02
 
|cpg_percent=0.02
Line 23: Line 23:
 
|nearest_refseq=NM_008175
 
|nearest_refseq=NM_008175
 
|nearest_unigene=Mm.1568
 
|nearest_unigene=Mm.1568
|num_trans=18
+
|num_trans=14824
 
|species=mouse
 
|species=mouse
 
|start=102435061
 
|start=102435061

Latest revision as of 19:26, 28 July 2021

Basic information about the TSS


TSS ID:mm_99458.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:102435061
End:102435075
Strand:+
TSS Score:1
Start of the center position in the TSS region:102435068
End of the center position in the TSS region:102435069



Gene and protein annotation


Transcript_name:AK204596 AK204598
Distance:40
GeneID:14824
HGNC/MGI_ID:MGI:95832
UniProt_ID:
Gene_name:granulin
Gene_symbol:Grn
Gene_synonyms:PC_cell-derived_growth_factor Pgrn acrogranulin epithelin progranulin
Gene_source:MGI:95832



Transcript annotation


Transcript_name:AK204596 AK204598
Distance:40
Num_trans:14824
All_trans:MGI:95832



TATA-Box annotation


Distance to TSS:4561
Nearest PromoterID:NM_008175
Entrez ID:14824
Nearest Unigene:Mm.1568
Nearest Refseq:NM_008175
Nearest Ensembl:ENSMUSG00000034708
Gene Name:granulin
Gene Alias:GP88|PCDGF|PEPI|Pgrn|epithelin
Gene Description:granulin
Gene Type:protein-coding
CpG%:0.02
GC%:0.587065
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):