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Difference between revisions of "TSS:Mm 99462.1"

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{{TSSDetail
 
{{TSSDetail
|all_trans=ENSMUST00000125819.8:0 ENSMUST00000127530.2:9 LF230897:-19 MA466474:-19 AK212296:-35 LF230898:42 MA466475:42 AK181447:72 AK184964:72 AK187351:72 AK188116:72 AK190913:72 ENSMUST00000177428.1:119 AK204596:-164 AK204598:-164 LF230899:438 MA466476:438
+
|all_trans=MGI:95832
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.025
 
|cpg_percent=0.025
Line 23: Line 23:
 
|nearest_refseq=NM_008175
 
|nearest_refseq=NM_008175
 
|nearest_unigene=Mm.1568
 
|nearest_unigene=Mm.1568
|num_trans=17
+
|num_trans=14824
 
|species=mouse
 
|species=mouse
 
|start=102435278
 
|start=102435278

Latest revision as of 19:26, 28 July 2021

Basic information about the TSS


TSS ID:mm_99462.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:102435278
End:102435297
Strand:+
TSS Score:1
Start of the center position in the TSS region:102435287
End of the center position in the TSS region:102435288



Gene and protein annotation


Transcript_name:ENSMUST00000125819.8
Distance:0
GeneID:14824
HGNC/MGI_ID:MGI:95832
UniProt_ID:H3BJE0
Gene_name:granulin
Gene_symbol:Grn
Gene_synonyms:PC_cell-derived_growth_factor Pgrn acrogranulin epithelin progranulin
Gene_source:MGI:95832



Transcript annotation


Transcript_name:ENSMUST00000125819.8
Distance:0
Num_trans:14824
All_trans:MGI:95832



TATA-Box annotation


Distance to TSS:4781
Nearest PromoterID:NM_008175
Entrez ID:14824
Nearest Unigene:Mm.1568
Nearest Refseq:NM_008175
Nearest Ensembl:ENSMUSG00000034708
Gene Name:granulin
Gene Alias:GP88|PCDGF|PEPI|Pgrn|epithelin
Gene Description:granulin
Gene Type:protein-coding
CpG%:0.025
GC%:0.557214
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):