Difference between revisions of "TSS:Hg 100056.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=68 |entrez_id=158326 |gc_percent=0.383085 |gene_alias=BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2 |gene_description=FRAS1...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |C9orf143= | ||
| + | |C9orf145= | ||
| + | |C9orf154= | ||
| + | |MOTA= | ||
| + | |TILRR= | ||
| + | |TRIGNO2= | ||
| + | |all_trans=ENST00000422223.6:-65 ENST00000380875.7:-65 NM_144966:-65 uc003zlm.3:-65 uc064seo.1:-65 BX537574:-65 ENST00000380880.3:495 uc064seq.1:495 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=-65 | ||
|distance_to_tss=68 | |distance_to_tss=68 | ||
| + | |end=14910930 | ||
|entrez_id=158326 | |entrez_id=158326 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
|gene_alias=BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2 | |gene_alias=BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2 | ||
|gene_description=FRAS1 related extracellular matrix 1 | |gene_description=FRAS1 related extracellular matrix 1 | ||
| − | |gene_name=FREM1 | + | |gene_id=158326 |
| + | |gene_name=FRAS1 related extracellular matrix 1 | ||
| + | |gene_source=HGNC:23399 | ||
| + | |gene_symbol=FREM1 | ||
| + | |gene_synonyms=C9orf143 C9orf145 DKFZp686M16108 FLJ25461 TILRR | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23399 | ||
|nearest_ensembl=ENSG00000164946 | |nearest_ensembl=ENSG00000164946 | ||
|nearest_promoter_id=NM_144966 | |nearest_promoter_id=NM_144966 | ||
|nearest_refseq=NM_144966 | |nearest_refseq=NM_144966 | ||
|nearest_unigene=Hs.50850 | |nearest_unigene=Hs.50850 | ||
| + | |num_trans=8 | ||
| + | |species=human | ||
| + | |start=14910924 | ||
| + | |strand=- | ||
|tata_box="11(TCCCTTAAATGC,-,0.00),13(CCTTAAATGCCA,+,0.00)" | |tata_box="11(TCCCTTAAATGC,-,0.00),13(CCTTAAATGCCA,+,0.00)" | ||
| + | |transcript_name=ENST00000422223.6 ENST00000380875.7 NM_144966 uc003zlm.3 uc064seo.1 BX537574 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100056.1 | |tss_id=hg_100056.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=F8WE85 Q5H8C1 | ||
}} | }} | ||
Revision as of 17:00, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000422223.6 ENST00000380875.7 NM_144966 uc003zlm.3 uc064seo.1 BX537574 |
|---|---|
| Distance: | -65 |
| Num_trans: | 8 |
| All_trans: | ENST00000422223.6:-65 ENST00000380875.7:-65 NM_144966:-65 uc003zlm.3:-65 uc064seo.1:-65 BX537574:-65 ENST00000380880.3:495 uc064seq.1:495 |
TATA-Box annotation
| Distance to TSS: | 68 |
|---|---|
| Nearest PromoterID: | NM_144966 |
| Entrez ID: | 158326 |
| Nearest Unigene: | Hs.50850 |
| Nearest Refseq: | NM_144966 |
| Nearest Ensembl: | ENSG00000164946 |
| Gene Name: | FRAS1 related extracellular matrix 1 |
| Gene Alias: | BNAR |
| Gene Description: | FRAS1 related extracellular matrix 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "11(TCCCTTAAATGC,-,0.00),13(CCTTAAATGCCA,+,0.00)" |
