Difference between revisions of "TSS:Hg 100543.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.045 |distance_to_tss=30 |entrez_id=730098 |gc_percent=0.641791 |gene_alias=- |gene_description=uncharacterized LOC730098 |gene_name=LOC730098 |gene_...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000564224.1:0 ENST00000421828.6:0 ENST00000416454.5:0 ENST00000544078.2:0 NM_001320037:0 NM_001320038:0 NR_135148:0 uc064suo.1:0 uc064sup.1:0 uc064sur.1:0 uc064sut.1:0 BC037171:0 AK296005:0 BC066358:0 ENST00000423809.5:-46 uc064sus.1:-46 ENST00000555007.1:492 uc064suq.1:492 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| + | |distance=0 | ||
|distance_to_tss=30 | |distance_to_tss=30 | ||
| + | |end=34666066 | ||
|entrez_id=730098 | |entrez_id=730098 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=uncharacterized LOC730098 | |gene_description=uncharacterized LOC730098 | ||
| − | |gene_name= | + | |gene_id=10850 |
| + | |gene_name=C-C motif chemokine ligand 27 | ||
| + | |gene_source=HGNC:10626 | ||
| + | |gene_symbol=CCL27 | ||
| + | |gene_synonyms=ALP CTACK CTAK ESkine ILC PESKY skinkine | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10626 | ||
|nearest_ensembl=ENSG00000187186 | |nearest_ensembl=ENSG00000187186 | ||
|nearest_promoter_id=NM_001320037 | |nearest_promoter_id=NM_001320037 | ||
|nearest_refseq=NM_001320037 | |nearest_refseq=NM_001320037 | ||
|nearest_unigene=Hs.459590 | |nearest_unigene=Hs.459590 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=34665986 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000564224.1 ENST00000421828.6 ENST00000416454.5 ENST00000544078.2 NM_001320037 NM_001320038 NR_135148 uc064suo.1 uc064sup.1 uc064sur.1 uc064sut.1 BC037171 AK296005 BC066358 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100543.1 | |tss_id=hg_100543.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:11, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000564224.1 ENST00000421828.6 ENST00000416454.5 ENST00000544078.2 NM_001320037 NM_001320038 NR_135148 uc064suo.1 uc064sup.1 uc064sur.1 uc064sut.1 BC037171 AK296005 BC066358 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000564224.1:0 ENST00000421828.6:0 ENST00000416454.5:0 ENST00000544078.2:0 NM_001320037:0 NM_001320038:0 NR_135148:0 uc064suo.1:0 uc064sup.1:0 uc064sur.1:0 uc064sut.1:0 BC037171:0 AK296005:0 BC066358:0 ENST00000423809.5:-46 uc064sus.1:-46 ENST00000555007.1:492 uc064suq.1:492 |
TATA-Box annotation
| Distance to TSS: | 30 |
|---|---|
| Nearest PromoterID: | NM_001320037 |
| Entrez ID: | 730098 |
| Nearest Unigene: | Hs.459590 |
| Nearest Refseq: | NM_001320037 |
| Nearest Ensembl: | ENSG00000187186 |
| Gene Name: | C-C motif chemokine ligand 27 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC730098 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
