Difference between revisions of "TSS:Hg 100548.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=49 |entrez_id=259308 |gc_percent=0.477612 |gene_alias=C9orf144B |gene_description=family with sequence similarity 205 member A |...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=AK302320:15 ENST00000378788.3:16 uc011lor.3:16 AK301951:16 NM_001141917:-43 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=15 | ||
|distance_to_tss=49 | |distance_to_tss=49 | ||
| + | |end=34729495 | ||
|entrez_id=259308 | |entrez_id=259308 | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
|gene_alias=C9orf144B | |gene_alias=C9orf144B | ||
|gene_description=family with sequence similarity 205 member A | |gene_description=family with sequence similarity 205 member A | ||
| − | |gene_name=FAM205A | + | |gene_id=259308 |
| + | |gene_name=family with sequence similarity 205 member A | ||
| + | |gene_source=HGNC:41911 | ||
| + | |gene_symbol=FAM205A | ||
| + | |gene_synonyms=C9orf144B | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:41911 | ||
|nearest_ensembl=ENSG00000205108 | |nearest_ensembl=ENSG00000205108 | ||
|nearest_promoter_id=NM_001141917 | |nearest_promoter_id=NM_001141917 | ||
|nearest_refseq=NM_001141917 | |nearest_refseq=NM_001141917 | ||
|nearest_unigene=Hs.522093 | |nearest_unigene=Hs.522093 | ||
| + | |num_trans=5 | ||
| + | |species=human | ||
| + | |start=34729482 | ||
| + | |strand=- | ||
| + | |transcript_name=AK302320 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100548.1 | |tss_id=hg_100548.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DY95 | ||
}} | }} | ||
Revision as of 17:11, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK302320 |
|---|---|
| Distance: | 15 |
| Num_trans: | 5 |
| All_trans: | AK302320:15 ENST00000378788.3:16 uc011lor.3:16 AK301951:16 NM_001141917:-43 |
TATA-Box annotation
| Distance to TSS: | 49 |
|---|---|
| Nearest PromoterID: | NM_001141917 |
| Entrez ID: | 259308 |
| Nearest Unigene: | Hs.522093 |
| Nearest Refseq: | NM_001141917 |
| Nearest Ensembl: | ENSG00000205108 |
| Gene Name: | family with sequence similarity 205 member A |
| Gene Alias: | C9orf144B |
| Gene Description: | family with sequence similarity 205 member A |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
