Difference between revisions of "TSS:Hg 101937.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.045 |distance_to_tss=58 |entrez_id=79987 |gc_percent=0.547264 |gene_alias=C9orf13|CCP22|POLYDOM|SEL-OB|SELOB |gene_description="sushi, von Willebran...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CCP22= | ||
| + | |POLYDOM= | ||
| + | |SEL-OB= | ||
| + | |SELOB= | ||
| + | |all_trans=AK122605:-43 ENST00000401783.6:-47 ENST00000374461.1:-47 NM_153366:-47 uc064vae.1:-47 uc004beu.2:-47 BC030816:-47 ENST00000374469.5:74 uc010mtz.4:74 AJ619977:106 AY243503:106 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| + | |distance=-43 | ||
|distance_to_tss=58 | |distance_to_tss=58 | ||
| + | |end=110579833 | ||
|entrez_id=79987 | |entrez_id=79987 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
|gene_alias=C9orf13|CCP22|POLYDOM|SEL-OB|SELOB | |gene_alias=C9orf13|CCP22|POLYDOM|SEL-OB|SELOB | ||
|gene_description="sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1" | |gene_description="sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1" | ||
| − | |gene_name=SVEP1 | + | |gene_id=79987 |
| + | |gene_name="sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1" | ||
| + | |gene_source=HGNC:15985 | ||
| + | |gene_symbol=SVEP1 | ||
| + | |gene_synonyms=FLJ13529 POLYDOM bA427L11.3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:15985 | ||
|nearest_ensembl=ENSG00000165124 | |nearest_ensembl=ENSG00000165124 | ||
|nearest_promoter_id=NM_153366 | |nearest_promoter_id=NM_153366 | ||
|nearest_refseq=NM_153366 | |nearest_refseq=NM_153366 | ||
|nearest_unigene=Hs.522334 | |nearest_unigene=Hs.522334 | ||
| + | |num_trans=11 | ||
| + | |species=human | ||
| + | |start=110579811 | ||
| + | |strand=- | ||
|tata_box="-3(CATTTTATAGGC,+,0.00)" | |tata_box="-3(CATTTTATAGGC,+,0.00)" | ||
| + | |transcript_name=AK122605 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101937.1 | |tss_id=hg_101937.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B3KV07 | ||
}} | }} | ||
Revision as of 19:05, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK122605 |
|---|---|
| Distance: | -43 |
| Num_trans: | 11 |
| All_trans: | AK122605:-43 ENST00000401783.6:-47 ENST00000374461.1:-47 NM_153366:-47 uc064vae.1:-47 uc004beu.2:-47 BC030816:-47 ENST00000374469.5:74 uc010mtz.4:74 AJ619977:106 AY243503:106 |
TATA-Box annotation
| Distance to TSS: | 58 |
|---|---|
| Nearest PromoterID: | NM_153366 |
| Entrez ID: | 79987 |
| Nearest Unigene: | Hs.522334 |
| Nearest Refseq: | NM_153366 |
| Nearest Ensembl: | ENSG00000165124 |
| Gene Name: | "sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1" |
| Gene Alias: | C9orf13 |
| Gene Description: | "sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1" |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-3(CATTTTATAGGC,+,0.00)" |
