Difference between revisions of "TSS:Hg 101938.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=-40 |entrez_id=79987 |gc_percent=0.542289 |gene_alias=C9orf13|CCP22|POLYDOM|SEL-OB|SELOB |gene_description="sushi, von Willebran...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CCP22= | ||
| + | |POLYDOM= | ||
| + | |SEL-OB= | ||
| + | |SELOB= | ||
| + | |all_trans=ENST00000401783.6:26 ENST00000374461.1:26 NM_153366:26 uc064vae.1:26 uc004beu.2:26 BC030816:26 AK122605:30 ENST00000374469.5:168 uc010mtz.4:168 AJ619977:200 AY243503:200 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=26 | ||
|distance_to_tss=-40 | |distance_to_tss=-40 | ||
| + | |end=110579934 | ||
|entrez_id=79987 | |entrez_id=79987 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
|gene_alias=C9orf13|CCP22|POLYDOM|SEL-OB|SELOB | |gene_alias=C9orf13|CCP22|POLYDOM|SEL-OB|SELOB | ||
|gene_description="sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1" | |gene_description="sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1" | ||
| − | |gene_name=SVEP1 | + | |gene_id=79987 |
| + | |gene_name="sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1" | ||
| + | |gene_source=HGNC:15985 | ||
| + | |gene_symbol=SVEP1 | ||
| + | |gene_synonyms=FLJ13529 POLYDOM bA427L11.3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:15985 | ||
|nearest_ensembl=ENSG00000165124 | |nearest_ensembl=ENSG00000165124 | ||
|nearest_promoter_id=NM_153366 | |nearest_promoter_id=NM_153366 | ||
|nearest_refseq=NM_153366 | |nearest_refseq=NM_153366 | ||
|nearest_unigene=Hs.522334 | |nearest_unigene=Hs.522334 | ||
| + | |num_trans=11 | ||
| + | |species=human | ||
| + | |start=110579905 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000401783.6 ENST00000374461.1 NM_153366 uc064vae.1 uc004beu.2 BC030816 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101938.1 | |tss_id=hg_101938.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A075B6H1 A0A0A0MSD0 Q4LDE5 Q5JB40 | ||
}} | }} | ||
Revision as of 19:05, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000401783.6 ENST00000374461.1 NM_153366 uc064vae.1 uc004beu.2 BC030816 |
|---|---|
| Distance: | 26 |
| Num_trans: | 11 |
| All_trans: | ENST00000401783.6:26 ENST00000374461.1:26 NM_153366:26 uc064vae.1:26 uc004beu.2:26 BC030816:26 AK122605:30 ENST00000374469.5:168 uc010mtz.4:168 AJ619977:200 AY243503:200 |
TATA-Box annotation
| Distance to TSS: | -40 |
|---|---|
| Nearest PromoterID: | NM_153366 |
| Entrez ID: | 79987 |
| Nearest Unigene: | Hs.522334 |
| Nearest Refseq: | NM_153366 |
| Nearest Ensembl: | ENSG00000165124 |
| Gene Name: | "sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1" |
| Gene Alias: | C9orf13 |
| Gene Description: | "sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1" |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
