Difference between revisions of "TSS:Hg 102022.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.05 |distance_to_tss=208 |entrez_id=22949 |gc_percent=0.646766 |gene_alias=LTB4DH|PGR1|ZADH3 |gene_description=prostaglandin reductase 1 |gene_name=P...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PGR1= | ||
| + | |ZADH3= | ||
| + | |all_trans=AK091948:0 AK309450:0 D49387:15 ENST00000422125.1:-40 uc064vbc.1:-40 ENST00000374313.5:-161 uc064vbd.1:-161 AK309866:-166 AK298379:-180 ENST00000538962.5:-200 ENST00000407693.6:-200 NM_001146109:-200 NM_001146108:-200 uc011lwr.2:-200 uc004bfi.3:-200 AK289597:-200 NM_012212:209 BC035228:209 ENST00000309195.9:233 ENST00000374308.1:233 uc004bfh.3:233 uc064vbe.1:233 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| + | |distance=0 | ||
|distance_to_tss=208 | |distance_to_tss=208 | ||
| + | |end=111599655 | ||
|entrez_id=22949 | |entrez_id=22949 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
|gene_alias=LTB4DH|PGR1|ZADH3 | |gene_alias=LTB4DH|PGR1|ZADH3 | ||
|gene_description=prostaglandin reductase 1 | |gene_description=prostaglandin reductase 1 | ||
| − | |gene_name=PTGR1 | + | |gene_id=22949 |
| + | |gene_name=prostaglandin reductase 1 | ||
| + | |gene_source=HGNC:18429 | ||
| + | |gene_symbol=PTGR1 | ||
| + | |gene_synonyms=ZADH3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:18429 | ||
|nearest_ensembl=ENSG00000106853 | |nearest_ensembl=ENSG00000106853 | ||
|nearest_promoter_id=NM_001146108 | |nearest_promoter_id=NM_001146108 | ||
|nearest_refseq=NM_012212 | |nearest_refseq=NM_012212 | ||
|nearest_unigene=Hs.584864 | |nearest_unigene=Hs.584864 | ||
| + | |num_trans=22 | ||
| + | |species=human | ||
| + | |start=111599639 | ||
| + | |strand=- | ||
| + | |transcript_name=AK091948 AK309450 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102022.1 | |tss_id=hg_102022.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:08, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK091948 AK309450 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | AK091948:0 AK309450:0 D49387:15 ENST00000422125.1:-40 uc064vbc.1:-40 ENST00000374313.5:-161 uc064vbd.1:-161 AK309866:-166 AK298379:-180 ENST00000538962.5:-200 ENST00000407693.6:-200 NM_001146109:-200 NM_001146108:-200 uc011lwr.2:-200 uc004bfi.3:-200 AK289597:-200 NM_012212:209 BC035228:209 ENST00000309195.9:233 ENST00000374308.1:233 uc004bfh.3:233 uc064vbe.1:233 |
TATA-Box annotation
| Distance to TSS: | 208 |
|---|---|
| Nearest PromoterID: | NM_001146108 |
| Entrez ID: | 22949 |
| Nearest Unigene: | Hs.584864 |
| Nearest Refseq: | NM_012212 |
| Nearest Ensembl: | ENSG00000106853 |
| Gene Name: | prostaglandin reductase 1 |
| Gene Alias: | LTB4DH |
| Gene Description: | prostaglandin reductase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
