Difference between revisions of "TSS:Hg 102306.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=56 |entrez_id=26190 |gc_percent=0.751244 |gene_alias=FBW2|Fwd2|Md6 |gene_description=F-box and WD repeat domain containing 2 |ge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |Fwd2= | ||
| + | |Md6= | ||
| + | |all_trans=ENST00000608872.5:0 ENST00000453291.1:0 ENST00000476481.1:0 uc004bkm.2:0 uc064viy.1:0 uc064vja.1:0 BC018738:0 AK300066:0 AK022484:0 AK091860:0 AK314385:0 BC000239:1 AF145024:9 AF193594:9 ENST00000474117.1:11 uc064viz.1:11 BC110334:16 NM_012164:-28 AF176698:127 DQ598105:271 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| + | |distance=0 | ||
|distance_to_tss=56 | |distance_to_tss=56 | ||
| + | |end=120793434 | ||
|entrez_id=26190 | |entrez_id=26190 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
|gene_alias=FBW2|Fwd2|Md6 | |gene_alias=FBW2|Fwd2|Md6 | ||
|gene_description=F-box and WD repeat domain containing 2 | |gene_description=F-box and WD repeat domain containing 2 | ||
| − | |gene_name=FBXW2 | + | |gene_id=26190 |
| + | |gene_name=F-box and WD repeat domain containing 2 | ||
| + | |gene_source=HGNC:13608 | ||
| + | |gene_symbol=FBXW2 | ||
| + | |gene_synonyms=FBW2 Fwd2 Md6 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:13608 | ||
|nearest_ensembl=ENSG00000119402 | |nearest_ensembl=ENSG00000119402 | ||
|nearest_promoter_id=NM_012164 | |nearest_promoter_id=NM_012164 | ||
|nearest_refseq=NM_012164 | |nearest_refseq=NM_012164 | ||
|nearest_unigene=Hs.494985 | |nearest_unigene=Hs.494985 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=120793377 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000608872.5 ENST00000453291.1 ENST00000476481.1 uc004bkm.2 uc064viy.1 uc064vja.1 BC018738 AK300066 AK022484 AK091860 AK314385 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102306.1 | |tss_id=hg_102306.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B2RAW3 B4DT60 Q4VXH1 Q9UKT8 | ||
}} | }} | ||
Revision as of 19:20, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000608872.5 ENST00000453291.1 ENST00000476481.1 uc004bkm.2 uc064viy.1 uc064vja.1 BC018738 AK300066 AK022484 AK091860 AK314385 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000608872.5:0 ENST00000453291.1:0 ENST00000476481.1:0 uc004bkm.2:0 uc064viy.1:0 uc064vja.1:0 BC018738:0 AK300066:0 AK022484:0 AK091860:0 AK314385:0 BC000239:1 AF145024:9 AF193594:9 ENST00000474117.1:11 uc064viz.1:11 BC110334:16 NM_012164:-28 AF176698:127 DQ598105:271 |
TATA-Box annotation
| Distance to TSS: | 56 |
|---|---|
| Nearest PromoterID: | NM_012164 |
| Entrez ID: | 26190 |
| Nearest Unigene: | Hs.494985 |
| Nearest Refseq: | NM_012164 |
| Nearest Ensembl: | ENSG00000119402 |
| Gene Name: | F-box and WD repeat domain containing 2 |
| Gene Alias: | FBW2 |
| Gene Description: | F-box and WD repeat domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
