Difference between revisions of "TSS:Hg 103427.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.17 |distance_to_tss=-320 |entrez_id=23185 |gc_percent=0.820896 |gene_alias=KIAA0217|LARP5 |gene_description=La ribonucleoprotein domain family membe...") |
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| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |LARP5= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.17 | |cpg_percent=0.17 | ||
| + | |distance= | ||
|distance_to_tss=-320 | |distance_to_tss=-320 | ||
| + | |end=932070 | ||
|entrez_id=23185 | |entrez_id=23185 | ||
|gc_percent=0.820896 | |gc_percent=0.820896 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_015155 | |nearest_refseq=NM_015155 | ||
|nearest_unigene=Hs.159069 | |nearest_unigene=Hs.159069 | ||
| + | |num_trans=0 | ||
| + | |species=human | ||
| + | |start=931979 | ||
| + | |strand=+ | ||
|tata_box="67(GCCCCTTAAAGA,-,0.00),68(CCCCTTAAAGAC,+,0.00),70(CCTTAAAGACCC,+,0.00)" | |tata_box="67(GCCCCTTAAAGA,-,0.00),68(CCCCTTAAAGAC,+,0.00),70(CCTTAAAGACCC,+,0.00)" | ||
| + | |transcript_name= | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103427.1 | |tss_id=hg_103427.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 20:08, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -320 |
|---|---|
| Nearest PromoterID: | NM_015155 |
| Entrez ID: | 23185 |
| Nearest Unigene: | Hs.159069 |
| Nearest Refseq: | NM_015155 |
| Nearest Ensembl: | ENSG00000107929 |
| Gene Name: | LARP4B |
| Gene Alias: | KIAA0217 |
| Gene Description: | La ribonucleoprotein domain family member 4B |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.820896 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "67(GCCCCTTAAAGA,-,0.00),68(CCCCTTAAAGAC,+,0.00),70(CCTTAAAGACCC,+,0.00)" |
