Difference between revisions of "TSS:Hg 103800.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=1066 |entrez_id=2625 |gc_percent=0.671642 |gene_alias=HDR|HDRS |gene_description=GATA binding protein 3 |gene_name=GATA3 |gene_ty...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |HDRS= | ||
| + | |all_trans=KJ896866:-105 CU678358:-106 KJ905755:-106 AM392571:-107 AM392688:-107 AB463676:-108 M69106:-227 X55037:-232 X58072:-257 X55122:-306 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=-105 | ||
|distance_to_tss=1066 | |distance_to_tss=1066 | ||
| + | |end=8055780 | ||
|entrez_id=2625 | |entrez_id=2625 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_002051 | |nearest_refseq=NM_002051 | ||
|nearest_unigene=Hs.524134 | |nearest_unigene=Hs.524134 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=8055760 | ||
| + | |strand=+ | ||
| + | |transcript_name=KJ896866 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103800.1 | |tss_id=hg_103800.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 20:25, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | KJ896866 |
|---|---|
| Distance: | -105 |
| Num_trans: | 10 |
| All_trans: | KJ896866:-105 CU678358:-106 KJ905755:-106 AM392571:-107 AM392688:-107 AB463676:-108 M69106:-227 X55037:-232 X58072:-257 X55122:-306 |
TATA-Box annotation
| Distance to TSS: | 1066 |
|---|---|
| Nearest PromoterID: | NM_001002295 |
| Entrez ID: | 2625 |
| Nearest Unigene: | Hs.524134 |
| Nearest Refseq: | NM_002051 |
| Nearest Ensembl: | ENSG00000107485 |
| Gene Name: | GATA3 |
| Gene Alias: | HDR |
| Gene Description: | GATA binding protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
