Difference between revisions of "TSS:Hg 104056.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=579 |entrez_id=7431 |gc_percent=0.671642 |gene_alias=CTRCT30|HEL113 |gene_description=vimentin |gene_name=VIM |gene_type=protei...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HEL113= | ||
| + | |all_trans=ENST00000497849.1:2 uc057sbb.1:2 ENST00000478746.1:-295 uc057sba.1:-295 BC066956:-339 ENST00000224237.9:411 ENST00000487938.5:411 uc057sbc.1:411 uc057sbd.1:411 AK222507:411 AK222602:411 AK056766:411 AK091813:411 AK097336:411 AK098444:411 EU794672:411 X16478:412 AK222482:413 ENST00000485947.1:424 uc057sbe.1:424 AF328728:428 BC030573:432 BC000163:432 Z19554:437 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=2 | ||
|distance_to_tss=579 | |distance_to_tss=579 | ||
| + | |end=17228867 | ||
|entrez_id=7431 | |entrez_id=7431 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
|gene_alias=CTRCT30|HEL113 | |gene_alias=CTRCT30|HEL113 | ||
|gene_description=vimentin | |gene_description=vimentin | ||
| − | |gene_name=VIM | + | |gene_id=7431 |
| + | |gene_name=vimentin | ||
| + | |gene_source=HGNC:12692 | ||
| + | |gene_symbol=VIM | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12692 | ||
|nearest_ensembl=ENSG00000026025 | |nearest_ensembl=ENSG00000026025 | ||
|nearest_promoter_id=NM_003380 | |nearest_promoter_id=NM_003380 | ||
|nearest_refseq=NM_003380 | |nearest_refseq=NM_003380 | ||
|nearest_unigene=Hs.455493 | |nearest_unigene=Hs.455493 | ||
| + | |num_trans=24 | ||
| + | |species=human | ||
| + | |start=17228809 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000497849.1 uc057sbb.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104056.1 | |tss_id=hg_104056.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:36, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000497849.1 uc057sbb.1 |
|---|---|
| Distance: | 2 |
| Num_trans: | 24 |
| All_trans: | ENST00000497849.1:2 uc057sbb.1:2 ENST00000478746.1:-295 uc057sba.1:-295 BC066956:-339 ENST00000224237.9:411 ENST00000487938.5:411 uc057sbc.1:411 uc057sbd.1:411 AK222507:411 AK222602:411 AK056766:411 AK091813:411 AK097336:411 AK098444:411 EU794672:411 X16478:412 AK222482:413 ENST00000485947.1:424 uc057sbe.1:424 AF328728:428 BC030573:432 BC000163:432 Z19554:437 |
TATA-Box annotation
| Distance to TSS: | 579 |
|---|---|
| Nearest PromoterID: | NM_003380 |
| Entrez ID: | 7431 |
| Nearest Unigene: | Hs.455493 |
| Nearest Refseq: | NM_003380 |
| Nearest Ensembl: | ENSG00000026025 |
| Gene Name: | vimentin |
| Gene Alias: | CTRCT30 |
| Gene Description: | vimentin |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
