Difference between revisions of "TSS:Hg 104525.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=43 |entrez_id=102724316 |gc_percent=0.666667 |gene_alias=- |gene_description=SVIL antisense RNA 1 |gene_name=SVIL-AS1 |gene_typ...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000446807.5:0 uc057smn.1:0 BC031656:0 ENST00000427063.6:-2 uc001iun.3:-2 BC073888:-2 ENST00000423223.5:6 uc057smo.1:6 ENST00000445521.5:11 uc057smp.1:11 BC063483:11 ENST00000414457.5:-16 uc001iup.4:-16 ENST00000608994.5:-17 ENST00000609413.5:-17 ENST00000623175.3:17 uc057sml.1:-17 uc057smm.1:-17 uc001ium.3:17 AK056080:-17 AL832706:19 BC107795:-20 ENST00000438202.5:22 uc057smq.1:22 BC050354:-27 ENST00000413405.5:-35 uc001iuq.4:-35 BC066966:-35 NR_110929:-40 NR_110927:-40 NR_110926:-40 NR_110925:-40 NR_110924:-40 NR_110923:-40 NR_110922:-40 NR_110921:-40 NR_110920:-40 NR_003930:-40 ENST00000430295.5:-172 uc057smk.1:-172 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| + | |distance=0 | ||
|distance_to_tss=43 | |distance_to_tss=43 | ||
| + | |end=29409580 | ||
|entrez_id=102724316 | |entrez_id=102724316 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=SVIL antisense RNA 1 | |gene_description=SVIL antisense RNA 1 | ||
| − | |gene_name=SVIL-AS1 | + | |gene_id=102724316 |
| + | |gene_name=SVIL antisense RNA 1 | ||
| + | |gene_source=HGNC:51219 | ||
| + | |gene_symbol=SVIL-AS1 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:51219 | ||
|nearest_ensembl=ENSG00000224597 | |nearest_ensembl=ENSG00000224597 | ||
|nearest_promoter_id=NR_110926 | |nearest_promoter_id=NR_110926 | ||
|nearest_refseq=NR_003930 | |nearest_refseq=NR_003930 | ||
|nearest_unigene=Hs.499209 | |nearest_unigene=Hs.499209 | ||
| + | |num_trans=40 | ||
| + | |species=human | ||
| + | |start=29409573 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000446807.5 uc057smn.1 BC031656 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104525.1 | |tss_id=hg_104525.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:56, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000446807.5 uc057smn.1 BC031656 |
|---|---|
| Distance: | 0 |
| Num_trans: | 40 |
| All_trans: | ENST00000446807.5:0 uc057smn.1:0 BC031656:0 ENST00000427063.6:-2 uc001iun.3:-2 BC073888:-2 ENST00000423223.5:6 uc057smo.1:6 ENST00000445521.5:11 uc057smp.1:11 BC063483:11 ENST00000414457.5:-16 uc001iup.4:-16 ENST00000608994.5:-17 ENST00000609413.5:-17 ENST00000623175.3:17 uc057sml.1:-17 uc057smm.1:-17 uc001ium.3:17 AK056080:-17 AL832706:19 BC107795:-20 ENST00000438202.5:22 uc057smq.1:22 BC050354:-27 ENST00000413405.5:-35 uc001iuq.4:-35 BC066966:-35 NR_110929:-40 NR_110927:-40 NR_110926:-40 NR_110925:-40 NR_110924:-40 NR_110923:-40 NR_110922:-40 NR_110921:-40 NR_110920:-40 NR_003930:-40 ENST00000430295.5:-172 uc057smk.1:-172 |
TATA-Box annotation
| Distance to TSS: | 43 |
|---|---|
| Nearest PromoterID: | NR_110926 |
| Entrez ID: | 102724316 |
| Nearest Unigene: | Hs.499209 |
| Nearest Refseq: | NR_003930 |
| Nearest Ensembl: | ENSG00000224597 |
| Gene Name: | SVIL antisense RNA 1 |
| Gene Alias: | - |
| Gene Description: | SVIL antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.095 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
