Difference between revisions of "TSS:Hg 105842.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.045 |distance_to_tss=43 |entrez_id=80195 |gc_percent=0.621891 |gene_alias=C10orf57|bA369J21.6 |gene_description=transmembrane protein 254 |gene_name...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=AK309980:0 ENST00000372273.7:-7 uc057umm.1:-7 AL832483:-7 NM_001270369:-20 NM_001270368:-20 NM_001270367:-20 AK300490:-30 NM_001270374:156 NR_072987:156 NR_072985:156 NR_072984:156 NR_072986:156 ENST00000467529.5:181 uc001kbo.6:181 AL832397:181 ENST00000463029.5:184 uc001kbn.6:184 AK310160:191 AK311563:191 BX537803:192 ENST00000476173.5:206 uc031pwh.2:206 ENST00000483732.5:239 uc057umn.1:239 CR457310:-343 KJ894792:-345 ENST00000372274.5:-351 uc031pwd.2:-351 ENST00000372275.5:-361 uc031pwf.2:-361 ENST00000372281.7:-373 uc001kbl.5:-373 AK023325:-373 BC022252:-373 AK222536:-378 ENST00000372277.7:-397 ENST00000472622.5:-397 ENST00000613758.4:-397 NM_001270373:-397 NM_001270372:-397 NM_025125:-397 NM_001270371:-397 NM_001270370:-397 uc057umk.1:-397 uc057uml.1:-397 uc009xsn.5:-397 | ||
| + | |bA369J21.6= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| + | |distance=0 | ||
|distance_to_tss=43 | |distance_to_tss=43 | ||
| + | |end=80079089 | ||
|entrez_id=80195 | |entrez_id=80195 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
|gene_alias=C10orf57|bA369J21.6 | |gene_alias=C10orf57|bA369J21.6 | ||
|gene_description=transmembrane protein 254 | |gene_description=transmembrane protein 254 | ||
| − | |gene_name=TMEM254 | + | |gene_id=80195 |
| + | |gene_name=transmembrane protein 254 | ||
| + | |gene_source=HGNC:25804 | ||
| + | |gene_symbol=TMEM254 | ||
| + | |gene_synonyms=FLJ13263 bA369J21.6 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:25804 | ||
|nearest_ensembl=ENSG00000133678 | |nearest_ensembl=ENSG00000133678 | ||
|nearest_promoter_id=NM_001270369 | |nearest_promoter_id=NM_001270369 | ||
|nearest_refseq=NM_025125 | |nearest_refseq=NM_025125 | ||
|nearest_unigene=Hs.169982 | |nearest_unigene=Hs.169982 | ||
| + | |num_trans=47 | ||
| + | |species=human | ||
| + | |start=80079042 | ||
| + | |strand=+ | ||
|tata_box="-46(TCTTATATGGGG,+,0.00)" | |tata_box="-46(TCTTATATGGGG,+,0.00)" | ||
| + | |transcript_name=AK309980 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105842.1 | |tss_id=hg_105842.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:53, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK309980 |
|---|---|
| Distance: | 0 |
| Num_trans: | 47 |
| All_trans: | AK309980:0 ENST00000372273.7:-7 uc057umm.1:-7 AL832483:-7 NM_001270369:-20 NM_001270368:-20 NM_001270367:-20 AK300490:-30 NM_001270374:156 NR_072987:156 NR_072985:156 NR_072984:156 NR_072986:156 ENST00000467529.5:181 uc001kbo.6:181 AL832397:181 ENST00000463029.5:184 uc001kbn.6:184 AK310160:191 AK311563:191 BX537803:192 ENST00000476173.5:206 uc031pwh.2:206 ENST00000483732.5:239 uc057umn.1:239 CR457310:-343 KJ894792:-345 ENST00000372274.5:-351 uc031pwd.2:-351 ENST00000372275.5:-361 uc031pwf.2:-361 ENST00000372281.7:-373 uc001kbl.5:-373 AK023325:-373 BC022252:-373 AK222536:-378 ENST00000372277.7:-397 ENST00000472622.5:-397 ENST00000613758.4:-397 NM_001270373:-397 NM_001270372:-397 NM_025125:-397 NM_001270371:-397 NM_001270370:-397 uc057umk.1:-397 uc057uml.1:-397 uc009xsn.5:-397 |
TATA-Box annotation
| Distance to TSS: | 43 |
|---|---|
| Nearest PromoterID: | NM_001270369 |
| Entrez ID: | 80195 |
| Nearest Unigene: | Hs.169982 |
| Nearest Refseq: | NM_025125 |
| Nearest Ensembl: | ENSG00000133678 |
| Gene Name: | transmembrane protein 254 |
| Gene Alias: | C10orf57 |
| Gene Description: | transmembrane protein 254 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-46(TCTTATATGGGG,+,0.00)" |
