Difference between revisions of "TSS:Hg 105843.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.085 |distance_to_tss=27 |entrez_id=80195 |gc_percent=0.631841 |gene_alias=C10orf57|bA369J21.6 |gene_description=transmembrane protein 254 |gene_name...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000467529.5:0 ENST00000463029.5:0 uc001kbo.6:0 uc001kbn.6:0 AL832397:0 AK310160:0 AK311563:0 BX537803:0 ENST00000476173.5:8 uc031pwh.2:8 NM_001270374:-13 NR_072987:-13 NR_072985:-13 NR_072984:-13 NR_072986:-13 ENST00000483732.5:41 uc057umn.1:41 AK309980:-210 ENST00000372273.7:-222 uc057umm.1:-222 AL832483:-222 NM_001270369:-235 NM_001270368:-235 NM_001270367:-235 AK300490:-245 | ||
| + | |bA369J21.6= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| + | |distance=0 | ||
|distance_to_tss=27 | |distance_to_tss=27 | ||
| + | |end=80079287 | ||
|entrez_id=80195 | |entrez_id=80195 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
|gene_alias=C10orf57|bA369J21.6 | |gene_alias=C10orf57|bA369J21.6 | ||
|gene_description=transmembrane protein 254 | |gene_description=transmembrane protein 254 | ||
| − | |gene_name=TMEM254 | + | |gene_id=80195 |
| + | |gene_name=transmembrane protein 254 | ||
| + | |gene_source=HGNC:25804 | ||
| + | |gene_symbol=TMEM254 | ||
| + | |gene_synonyms=FLJ13263 bA369J21.6 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:25804 | ||
|nearest_ensembl=ENSG00000133678 | |nearest_ensembl=ENSG00000133678 | ||
|nearest_promoter_id=NR_072985 | |nearest_promoter_id=NR_072985 | ||
|nearest_refseq=NM_025125 | |nearest_refseq=NM_025125 | ||
|nearest_unigene=Hs.169982 | |nearest_unigene=Hs.169982 | ||
| + | |num_trans=25 | ||
| + | |species=human | ||
| + | |start=80079257 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000467529.5 ENST00000463029.5 uc001kbo.6 uc001kbn.6 AL832397 AK310160 AK311563 BX537803 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105843.1 | |tss_id=hg_105843.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:53, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000467529.5 ENST00000463029.5 uc001kbo.6 uc001kbn.6 AL832397 AK310160 AK311563 BX537803 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | ENST00000467529.5:0 ENST00000463029.5:0 uc001kbo.6:0 uc001kbn.6:0 AL832397:0 AK310160:0 AK311563:0 BX537803:0 ENST00000476173.5:8 uc031pwh.2:8 NM_001270374:-13 NR_072987:-13 NR_072985:-13 NR_072984:-13 NR_072986:-13 ENST00000483732.5:41 uc057umn.1:41 AK309980:-210 ENST00000372273.7:-222 uc057umm.1:-222 AL832483:-222 NM_001270369:-235 NM_001270368:-235 NM_001270367:-235 AK300490:-245 |
TATA-Box annotation
| Distance to TSS: | 27 |
|---|---|
| Nearest PromoterID: | NR_072985 |
| Entrez ID: | 80195 |
| Nearest Unigene: | Hs.169982 |
| Nearest Refseq: | NM_025125 |
| Nearest Ensembl: | ENSG00000133678 |
| Gene Name: | transmembrane protein 254 |
| Gene Alias: | C10orf57 |
| Gene Description: | transmembrane protein 254 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
