Difference between revisions of "TSS:Hg 106026.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=197 |entrez_id=9060 |gc_percent=0.671642 |gene_alias=ATPSK2|BCYM4|SK2 |gene_description=3'-phosphoadenosine 5'-phosphosulfate syn...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |BCYM4= | ||
| + | |SK2= | ||
| + | |all_trans=AF074331:0 AF091242:-10 AF150754:-10 AF173365:13 AK312556:-33 BC009894:-40 DQ893625:56 DQ895430:56 KR710243:59 KR710244:59 KJ905366:59 AF313907:61 ENST00000456849.1:-192 NM_004670:-192 NM_001015880:-192 uc001kew.4:-192 ENST00000361175.8:-298 uc001kex.4:-298 ENST00000465996.5:436 uc057usd.1:436 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=0 | ||
|distance_to_tss=197 | |distance_to_tss=197 | ||
| + | |end=87659921 | ||
|entrez_id=9060 | |entrez_id=9060 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
|gene_alias=ATPSK2|BCYM4|SK2 | |gene_alias=ATPSK2|BCYM4|SK2 | ||
|gene_description=3'-phosphoadenosine 5'-phosphosulfate synthase 2 | |gene_description=3'-phosphoadenosine 5'-phosphosulfate synthase 2 | ||
| − | |gene_name=PAPSS2 | + | |gene_id=9060 |
| + | |gene_name=3'-phosphoadenosine 5'-phosphosulfate synthase 2 | ||
| + | |gene_source=HGNC:8604 | ||
| + | |gene_symbol=PAPSS2 | ||
| + | |gene_synonyms=ATPSK2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8604 | ||
|nearest_ensembl=ENSG00000198682 | |nearest_ensembl=ENSG00000198682 | ||
|nearest_promoter_id=NM_001015880 | |nearest_promoter_id=NM_001015880 | ||
|nearest_refseq=NM_004670 | |nearest_refseq=NM_004670 | ||
|nearest_unigene=Hs.524491 | |nearest_unigene=Hs.524491 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=87659910 | ||
| + | |strand=+ | ||
|tata_box="-68(CTTTTTATACCT,+,0.00)" | |tata_box="-68(CTTTTTATACCT,+,0.00)" | ||
| + | |transcript_name=AF074331 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106026.1 | |tss_id=hg_106026.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 22:01, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AF074331 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | AF074331:0 AF091242:-10 AF150754:-10 AF173365:13 AK312556:-33 BC009894:-40 DQ893625:56 DQ895430:56 KR710243:59 KR710244:59 KJ905366:59 AF313907:61 ENST00000456849.1:-192 NM_004670:-192 NM_001015880:-192 uc001kew.4:-192 ENST00000361175.8:-298 uc001kex.4:-298 ENST00000465996.5:436 uc057usd.1:436 |
TATA-Box annotation
| Distance to TSS: | 197 |
|---|---|
| Nearest PromoterID: | NM_001015880 |
| Entrez ID: | 9060 |
| Nearest Unigene: | Hs.524491 |
| Nearest Refseq: | NM_004670 |
| Nearest Ensembl: | ENSG00000198682 |
| Gene Name: | 3'-phosphoadenosine 5'-phosphosulfate synthase 2 |
| Gene Alias: | ATPSK2 |
| Gene Description: | 3'-phosphoadenosine 5'-phosphosulfate synthase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-68(CTTTTTATACCT,+,0.00)" |
