Difference between revisions of "TSS:Hg 106295.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.025 |distance_to_tss=67 |entrez_id=9211 |gc_percent=0.497512 |gene_alias=ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 |gene_description=leucine ric...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ADPAEF= | ||
| + | |ADPEAF= | ||
| + | |EPITEMPIN= | ||
| + | |EPT= | ||
| + | |ETL1= | ||
| + | |IB1099= | ||
| + | |all_trans=ENST00000630487.2:0 uc057uxq.1:0 BC022500:0 ENST00000629035.2:-9 uc057uxp.1:-9 ENST00000627420.2:-20 ENST00000478763.2:20 uc009xui.4:-20 uc057uxr.1:20 AF055636:28 AF473548:28 AK309416:42 ENST00000630184.2:45 uc057uxs.1:45 ENST00000371418.8:-51 NM_001308276:-51 NM_005097:-51 NR_131777:-51 NM_001308275:-51 uc001kjc.5:-51 AY358885:70 ENST00000630047.2:78 uc010qnv.3:78 AK303956:78 ENST00000627699.1:183 uc057uxt.1:183 AK289706:240 CU692658:250 KJ892713:250 KR709465:250 KR709466:250 KR709467:250 KR709468:250 DQ892371:251 DQ895580:251 ENST00000371413.4:252 uc057uxu.1:252 KU178468:252 KU178469:252 KU178470:252 KU178471:252 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| + | |distance=0 | ||
|distance_to_tss=67 | |distance_to_tss=67 | ||
| + | |end=93757893 | ||
|entrez_id=9211 | |entrez_id=9211 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
|gene_alias=ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 | |gene_alias=ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 | ||
|gene_description=leucine rich glioma inactivated 1 | |gene_description=leucine rich glioma inactivated 1 | ||
| − | |gene_name=LGI1 | + | |gene_id=9211 |
| + | |gene_name="leucine-rich, glioma inactivated 1" | ||
| + | |gene_source=HGNC:6572 | ||
| + | |gene_symbol=LGI1 | ||
| + | |gene_synonyms=EPITEMPIN ETL1 IB1099 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:6572 | ||
|nearest_ensembl=ENSG00000108231 | |nearest_ensembl=ENSG00000108231 | ||
|nearest_promoter_id=NM_005097 | |nearest_promoter_id=NM_005097 | ||
|nearest_refseq=NM_005097 | |nearest_refseq=NM_005097 | ||
|nearest_unigene=Hs.533670 | |nearest_unigene=Hs.533670 | ||
| + | |num_trans=41 | ||
| + | |species=human | ||
| + | |start=93757859 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000630487.2 uc057uxq.1 BC022500 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106295.1 | |tss_id=hg_106295.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0D9SFS5 | ||
}} | }} | ||
Revision as of 22:12, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000630487.2 uc057uxq.1 BC022500 |
|---|---|
| Distance: | 0 |
| Num_trans: | 41 |
| All_trans: | ENST00000630487.2:0 uc057uxq.1:0 BC022500:0 ENST00000629035.2:-9 uc057uxp.1:-9 ENST00000627420.2:-20 ENST00000478763.2:20 uc009xui.4:-20 uc057uxr.1:20 AF055636:28 AF473548:28 AK309416:42 ENST00000630184.2:45 uc057uxs.1:45 ENST00000371418.8:-51 NM_001308276:-51 NM_005097:-51 NR_131777:-51 NM_001308275:-51 uc001kjc.5:-51 AY358885:70 ENST00000630047.2:78 uc010qnv.3:78 AK303956:78 ENST00000627699.1:183 uc057uxt.1:183 AK289706:240 CU692658:250 KJ892713:250 KR709465:250 KR709466:250 KR709467:250 KR709468:250 DQ892371:251 DQ895580:251 ENST00000371413.4:252 uc057uxu.1:252 KU178468:252 KU178469:252 KU178470:252 KU178471:252 |
TATA-Box annotation
| Distance to TSS: | 67 |
|---|---|
| Nearest PromoterID: | NM_005097 |
| Entrez ID: | 9211 |
| Nearest Unigene: | Hs.533670 |
| Nearest Refseq: | NM_005097 |
| Nearest Ensembl: | ENSG00000108231 |
| Gene Name: | "leucine-rich, glioma inactivated 1" |
| Gene Alias: | ADLTE |
| Gene Description: | leucine rich glioma inactivated 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
