Difference between revisions of "TSS:Hg 106327.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=91 |entrez_id=3070 |gc_percent=0.646766 |gene_alias=ICF4|LSH|Nbla10143|PASG|SMARCA6 |gene_description="helicase, lymphoid-speci...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |LSH= | ||
| + | |Nbla10143= | ||
| + | |PASG= | ||
| + | |SMARCA6= | ||
| + | |all_trans=BC111789:-11 ENST00000348459.9:-37 uc001kjt.5:-37 AF155827:-37 ENST00000630929.2:-38 uc057uzh.1:-38 BC105606:-38 AK308331:-51 AB527159:58 BC146308:58 ENST00000394036.5:59 ENST00000394045.5:59 uc009xuo.5:59 uc009xul.5:59 AB102716:59 AB102717:59 AB102718:59 AB102719:59 AB102720:59 AB102721:59 AB102722:59 AB102723:59 AB113248:59 AB113249:59 ENST00000419900.5:-64 uc057uzg.1:-64 BC068440:-64 BX538033:-68 AK314485:-76 NM_001289070:-87 NM_001289072:-87 NM_001289071:-87 NM_001289075:-87 NM_001289074:-87 NM_001289069:-87 NM_001289068:-87 NM_001289067:-87 NM_018063:-87 NM_001289073:-87 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| + | |distance=-11 | ||
|distance_to_tss=91 | |distance_to_tss=91 | ||
| + | |end=94545863 | ||
|entrez_id=3070 | |entrez_id=3070 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
|gene_alias=ICF4|LSH|Nbla10143|PASG|SMARCA6 | |gene_alias=ICF4|LSH|Nbla10143|PASG|SMARCA6 | ||
|gene_description="helicase, lymphoid-specific" | |gene_description="helicase, lymphoid-specific" | ||
| − | |gene_name=HELLS | + | |gene_id=3070 |
| + | |gene_name="helicase, lymphoid-specific" | ||
| + | |gene_source=HGNC:4861 | ||
| + | |gene_symbol=HELLS | ||
| + | |gene_synonyms=LSH Nbla10143 PASG SMARCA6 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:4861 | ||
|nearest_ensembl=ENSG00000119969 | |nearest_ensembl=ENSG00000119969 | ||
|nearest_promoter_id=NM_001289068 | |nearest_promoter_id=NM_001289068 | ||
|nearest_refseq=NM_018063 | |nearest_refseq=NM_018063 | ||
|nearest_unigene=Hs.463677 | |nearest_unigene=Hs.463677 | ||
| + | |num_trans=39 | ||
| + | |species=human | ||
| + | |start=94545853 | ||
| + | |strand=+ | ||
| + | |transcript_name=BC111789 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106327.1 | |tss_id=hg_106327.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 22:13, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC111789 |
|---|---|
| Distance: | -11 |
| Num_trans: | 39 |
| All_trans: | BC111789:-11 ENST00000348459.9:-37 uc001kjt.5:-37 AF155827:-37 ENST00000630929.2:-38 uc057uzh.1:-38 BC105606:-38 AK308331:-51 AB527159:58 BC146308:58 ENST00000394036.5:59 ENST00000394045.5:59 uc009xuo.5:59 uc009xul.5:59 AB102716:59 AB102717:59 AB102718:59 AB102719:59 AB102720:59 AB102721:59 AB102722:59 AB102723:59 AB113248:59 AB113249:59 ENST00000419900.5:-64 uc057uzg.1:-64 BC068440:-64 BX538033:-68 AK314485:-76 NM_001289070:-87 NM_001289072:-87 NM_001289071:-87 NM_001289075:-87 NM_001289074:-87 NM_001289069:-87 NM_001289068:-87 NM_001289067:-87 NM_018063:-87 NM_001289073:-87 |
TATA-Box annotation
| Distance to TSS: | 91 |
|---|---|
| Nearest PromoterID: | NM_001289068 |
| Entrez ID: | 3070 |
| Nearest Unigene: | Hs.463677 |
| Nearest Refseq: | NM_018063 |
| Nearest Ensembl: | ENSG00000119969 |
| Gene Name: | "helicase, lymphoid-specific" |
| Gene Alias: | ICF4 |
| Gene Description: | "helicase, lymphoid-specific" |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
