Difference between revisions of "TSS:Hg 106373.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=155 |entrez_id=54619 |gc_percent=0.716418 |gene_alias=bA690P14.1 |gene_description=cyclin J |gene_name=CCNJ |gene_type=protein-c...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000465148.2:0 uc010qoq.3:0 AK297264:0 AK092360:0 NM_001134375:-122 NM_001134376:-122 NM_019084:-122 BC043175:-127 ENST00000403870.7:-130 ENST00000265992.9:-130 uc001kln.4:-130 uc001klm.4:-130 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| + | |distance=0 | ||
|distance_to_tss=155 | |distance_to_tss=155 | ||
| + | |end=96043591 | ||
|entrez_id=54619 | |entrez_id=54619 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
|gene_alias=bA690P14.1 | |gene_alias=bA690P14.1 | ||
|gene_description=cyclin J | |gene_description=cyclin J | ||
| − | |gene_name=CCNJ | + | |gene_id=54619 |
| + | |gene_name=cyclin J | ||
| + | |gene_source=HGNC:23434 | ||
| + | |gene_symbol=CCNJ | ||
| + | |gene_synonyms=FLJ10895 bA690P14.1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23434 | ||
|nearest_ensembl=ENSG00000107443 | |nearest_ensembl=ENSG00000107443 | ||
|nearest_promoter_id=NM_019084 | |nearest_promoter_id=NM_019084 | ||
|nearest_refseq=NM_019084 | |nearest_refseq=NM_019084 | ||
|nearest_unigene=Hs.596479 | |nearest_unigene=Hs.596479 | ||
| + | |num_trans=12 | ||
| + | |species=human | ||
| + | |start=96043523 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000465148.2 uc010qoq.3 AK297264 AK092360 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106373.1 | |tss_id=hg_106373.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B3KRX5 Q5T5M9 | ||
}} | }} | ||
Revision as of 22:15, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000465148.2 uc010qoq.3 AK297264 AK092360 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENST00000465148.2:0 uc010qoq.3:0 AK297264:0 AK092360:0 NM_001134375:-122 NM_001134376:-122 NM_019084:-122 BC043175:-127 ENST00000403870.7:-130 ENST00000265992.9:-130 uc001kln.4:-130 uc001klm.4:-130 |
TATA-Box annotation
| Distance to TSS: | 155 |
|---|---|
| Nearest PromoterID: | NM_019084 |
| Entrez ID: | 54619 |
| Nearest Unigene: | Hs.596479 |
| Nearest Refseq: | NM_019084 |
| Nearest Ensembl: | ENSG00000107443 |
| Gene Name: | cyclin J |
| Gene Alias: | bA690P14.1 |
| Gene Description: | cyclin J |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
