Difference between revisions of "TSS:Hg 106377.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=-53 |entrez_id=9849 |gc_percent=0.636816 |gene_alias=ZNF518 |gene_description=zinc finger protein 518A |gene_name=ZNF518A |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000618241.1:23 uc057vce.1:23 ENST00000539666.5:48 ENST00000478086.5:48 ENST00000624776.3:48 NM_001278525:48 uc057vcf.1:48 uc057vcg.1:48 uc031wpn.2:48 AK095317:48 BC030967:48 ENST00000563195.1:64 uc057vch.1:64 BC109046:-94 BC109045:-99 ENST00000488700.5:-263 uc057vcd.1:-263 BC011627:-270 ENST00000316045.9:-283 NM_014803:-283 NM_001278526:-283 NM_001278524:-283 uc031wpm.2:-283 CR627437:-283 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=23 | ||
|distance_to_tss=-53 | |distance_to_tss=-53 | ||
| + | |end=96130008 | ||
|entrez_id=9849 | |entrez_id=9849 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_014803 | |nearest_refseq=NM_014803 | ||
|nearest_unigene=Hs.600823 | |nearest_unigene=Hs.600823 | ||
| + | |num_trans=24 | ||
| + | |species=human | ||
| + | |start=96129997 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000618241.1 uc057vce.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106377.1 | |tss_id=hg_106377.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 22:16, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000618241.1 uc057vce.1 |
|---|---|
| Distance: | 23 |
| Num_trans: | 24 |
| All_trans: | ENST00000618241.1:23 uc057vce.1:23 ENST00000539666.5:48 ENST00000478086.5:48 ENST00000624776.3:48 NM_001278525:48 uc057vcf.1:48 uc057vcg.1:48 uc031wpn.2:48 AK095317:48 BC030967:48 ENST00000563195.1:64 uc057vch.1:64 BC109046:-94 BC109045:-99 ENST00000488700.5:-263 uc057vcd.1:-263 BC011627:-270 ENST00000316045.9:-283 NM_014803:-283 NM_001278526:-283 NM_001278524:-283 uc031wpm.2:-283 CR627437:-283 |
TATA-Box annotation
| Distance to TSS: | -53 |
|---|---|
| Nearest PromoterID: | NM_001278525 |
| Entrez ID: | 9849 |
| Nearest Unigene: | Hs.600823 |
| Nearest Refseq: | NM_014803 |
| Nearest Ensembl: | ENSG00000177853 |
| Gene Name: | ZNF518A |
| Gene Alias: | ZNF518 |
| Gene Description: | zinc finger protein 518A |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
