Difference between revisions of "TSS:Hg 106428.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.08 |distance_to_tss=266 |entrez_id=10023 |gc_percent=0.711443 |gene_alias=- |gene_description="FRAT1, WNT signaling pathway regulator" |gene_name=FR...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=AB074890:-171 BC034476:-221 ENST00000371021.4:-245 uc001knc.2:-245 AK307245:-245 U58975:-245 NM_005479:-247 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| + | |distance=-171 | ||
|distance_to_tss=266 | |distance_to_tss=266 | ||
| + | |end=97319551 | ||
|entrez_id=10023 | |entrez_id=10023 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description="FRAT1, WNT signaling pathway regulator" | |gene_description="FRAT1, WNT signaling pathway regulator" | ||
| − | |gene_name=FRAT1 | + | |gene_id=10023 |
| + | |gene_name=frequently rearranged in advanced T-cell lymphomas 1 | ||
| + | |gene_source=HGNC:3944 | ||
| + | |gene_symbol=FRAT1 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:3944 | ||
|nearest_ensembl=ENSG00000165879 | |nearest_ensembl=ENSG00000165879 | ||
|nearest_promoter_id=NM_005479 | |nearest_promoter_id=NM_005479 | ||
|nearest_refseq=NM_005479 | |nearest_refseq=NM_005479 | ||
|nearest_unigene=Hs.126057 | |nearest_unigene=Hs.126057 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=97319511 | ||
| + | |strand=+ | ||
| + | |transcript_name=AB074890 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106428.1 | |tss_id=hg_106428.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 22:18, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AB074890 |
|---|---|
| Distance: | -171 |
| Num_trans: | 7 |
| All_trans: | AB074890:-171 BC034476:-221 ENST00000371021.4:-245 uc001knc.2:-245 AK307245:-245 U58975:-245 NM_005479:-247 |
TATA-Box annotation
| Distance to TSS: | 266 |
|---|---|
| Nearest PromoterID: | NM_005479 |
| Entrez ID: | 10023 |
| Nearest Unigene: | Hs.126057 |
| Nearest Refseq: | NM_005479 |
| Nearest Ensembl: | ENSG00000165879 |
| Gene Name: | frequently rearranged in advanced T-cell lymphomas 1 |
| Gene Alias: | - |
| Gene Description: | "FRAT1, WNT signaling pathway regulator" |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
