Difference between revisions of "TSS:Hg 10647.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=73 |entrez_id=101927895 |gc_percent=0.651741 |gene_alias=- |gene_description=uncharacterized LOC101927895 |gene_name=LOC10192789...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000375254.7:164 uc001bbi.4:164 BC041137:184 NM_020765:188 AF348492:192 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| + | |distance=164 | ||
|distance_to_tss=73 | |distance_to_tss=73 | ||
| + | |end=19210478 | ||
|entrez_id=101927895 | |entrez_id=101927895 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=uncharacterized LOC101927895 | |gene_description=uncharacterized LOC101927895 | ||
| − | |gene_name= | + | |gene_id=23352 |
| + | |gene_name=ubiquitin protein ligase E3 component n-recognin 4 | ||
| + | |gene_source=HGNC:30313 | ||
| + | |gene_symbol=UBR4 | ||
| + | |gene_synonyms=KIAA0462 KIAA1307 RBAF600 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:30313 | ||
|nearest_ensembl=ENSG00000230424 | |nearest_ensembl=ENSG00000230424 | ||
|nearest_promoter_id=NR_135115 | |nearest_promoter_id=NR_135115 | ||
|nearest_refseq=NR_135114 | |nearest_refseq=NR_135114 | ||
|nearest_unigene=Hs.660534 | |nearest_unigene=Hs.660534 | ||
| + | |num_trans=5 | ||
| + | |species=human | ||
| + | |start=19210439 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000375254.7 uc001bbi.4 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10647.1 | |tss_id=hg_10647.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5T4S7 | ||
}} | }} | ||
Revision as of 22:19, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000375254.7 uc001bbi.4 |
|---|---|
| Distance: | 164 |
| Num_trans: | 5 |
| All_trans: | ENST00000375254.7:164 uc001bbi.4:164 BC041137:184 NM_020765:188 AF348492:192 |
TATA-Box annotation
| Distance to TSS: | 73 |
|---|---|
| Nearest PromoterID: | NR_135115 |
| Entrez ID: | 101927895 |
| Nearest Unigene: | Hs.660534 |
| Nearest Refseq: | NR_135114 |
| Nearest Ensembl: | ENSG00000230424 |
| Gene Name: | ubiquitin protein ligase E3 component n-recognin 4 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC101927895 |
| Gene Type: | ncRNA |
| CpG%: | 0.12 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
