Difference between revisions of "TSS:Hg 10651.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.135 |distance_to_tss=30 |entrez_id=23065 |gc_percent=0.701493 |gene_alias=CAVIPMR|KIAA0090 |gene_description=ER membrane protein complex subunit 1 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |KIAA0090= | ||
| + | |all_trans=ENST00000375208.7:0 ENST00000475079.1:0 ENST00000488681.1:0 ENST00000356068.2:0 uc001bbr.5:0 uc057cwc.1:0 uc057cwd.1:0 uc057cwe.1:0 BX648708:0 AK075563:0 BX648627:0 AK291618:0 AB384435:2 CU689920:2 ENST00000375199.7:3 uc001bbq.5:3 KJ893323:3 ENST00000477853.5:-5 uc001bbo.5:-5 BC034589:-5 D42044:6 NM_001271429:-12 NM_001271428:-12 NM_001271427:-12 NM_015047:-12 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| + | |distance=0 | ||
|distance_to_tss=30 | |distance_to_tss=30 | ||
| + | |end=19251547 | ||
|entrez_id=23065 | |entrez_id=23065 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
|gene_alias=CAVIPMR|KIAA0090 | |gene_alias=CAVIPMR|KIAA0090 | ||
|gene_description=ER membrane protein complex subunit 1 | |gene_description=ER membrane protein complex subunit 1 | ||
| − | |gene_name=EMC1 | + | |gene_id=23065 |
| + | |gene_name=ER membrane protein complex subunit 1 | ||
| + | |gene_source=HGNC:28957 | ||
| + | |gene_symbol=EMC1 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28957 | ||
|nearest_ensembl=ENSG00000127463 | |nearest_ensembl=ENSG00000127463 | ||
|nearest_promoter_id=NM_001271429 | |nearest_promoter_id=NM_001271429 | ||
|nearest_refseq=NM_015047 | |nearest_refseq=NM_015047 | ||
|nearest_unigene=Hs.439200 | |nearest_unigene=Hs.439200 | ||
| + | |num_trans=25 | ||
| + | |species=human | ||
| + | |start=19251511 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000375208.7 ENST00000475079.1 ENST00000488681.1 ENST00000356068.2 uc001bbr.5 uc057cwc.1 uc057cwd.1 uc057cwe.1 BX648708 AK075563 BX648627 AK291618 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10651.1 | |tss_id=hg_10651.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5TG59 Q8N766 | ||
}} | }} | ||
Revision as of 22:21, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000375208.7 ENST00000475079.1 ENST00000488681.1 ENST00000356068.2 uc001bbr.5 uc057cwc.1 uc057cwd.1 uc057cwe.1 BX648708 AK075563 BX648627 AK291618 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | ENST00000375208.7:0 ENST00000475079.1:0 ENST00000488681.1:0 ENST00000356068.2:0 uc001bbr.5:0 uc057cwc.1:0 uc057cwd.1:0 uc057cwe.1:0 BX648708:0 AK075563:0 BX648627:0 AK291618:0 AB384435:2 CU689920:2 ENST00000375199.7:3 uc001bbq.5:3 KJ893323:3 ENST00000477853.5:-5 uc001bbo.5:-5 BC034589:-5 D42044:6 NM_001271429:-12 NM_001271428:-12 NM_001271427:-12 NM_015047:-12 |
TATA-Box annotation
| Distance to TSS: | 30 |
|---|---|
| Nearest PromoterID: | NM_001271429 |
| Entrez ID: | 23065 |
| Nearest Unigene: | Hs.439200 |
| Nearest Refseq: | NM_015047 |
| Nearest Ensembl: | ENSG00000127463 |
| Gene Name: | ER membrane protein complex subunit 1 |
| Gene Alias: | CAVIPMR |
| Gene Description: | ER membrane protein complex subunit 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
