Difference between revisions of "TSS:Hg 106519.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=-365 |entrez_id=6319 |gc_percent=0.736318 |gene_alias=FADS5|MSTP008|SCD1|SCDOS|hSCD1 |gene_description=stearoyl-CoA desaturase |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |MSTP008= | ||
| + | |SCD1= | ||
| + | |SCDOS= | ||
| + | |all_trans=NM_005063:343 ENST00000370355.2:452 uc001kqy.4:452 AB032261:452 BC062303:457 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=343 | ||
|distance_to_tss=-365 | |distance_to_tss=-365 | ||
| + | |end=100346672 | ||
|entrez_id=6319 | |entrez_id=6319 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
|gene_alias=FADS5|MSTP008|SCD1|SCDOS|hSCD1 | |gene_alias=FADS5|MSTP008|SCD1|SCDOS|hSCD1 | ||
|gene_description=stearoyl-CoA desaturase | |gene_description=stearoyl-CoA desaturase | ||
| − | |gene_name=SCD | + | |gene_id=6319 |
| + | |gene_name=stearoyl-CoA desaturase (delta-9-desaturase) | ||
| + | |gene_source=HGNC:10571 | ||
| + | |gene_symbol=SCD | ||
| + | |gene_synonyms=FADS5 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hSCD1= | ||
| + | |hgnc_mgi_id=HGNC:10571 | ||
|nearest_ensembl=ENSG00000099194 | |nearest_ensembl=ENSG00000099194 | ||
|nearest_promoter_id=NM_005063 | |nearest_promoter_id=NM_005063 | ||
|nearest_refseq=NM_005063 | |nearest_refseq=NM_005063 | ||
|nearest_unigene=Hs.558396 | |nearest_unigene=Hs.558396 | ||
| + | |num_trans=5 | ||
| + | |species=human | ||
| + | |start=100346627 | ||
| + | |strand=+ | ||
| + | |transcript_name=NM_005063 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106519.1 | |tss_id=hg_106519.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=O00767 | ||
}} | }} | ||
Revision as of 22:22, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_005063 |
|---|---|
| Distance: | 343 |
| Num_trans: | 5 |
| All_trans: | NM_005063:343 ENST00000370355.2:452 uc001kqy.4:452 AB032261:452 BC062303:457 |
TATA-Box annotation
| Distance to TSS: | -365 |
|---|---|
| Nearest PromoterID: | NM_005063 |
| Entrez ID: | 6319 |
| Nearest Unigene: | Hs.558396 |
| Nearest Refseq: | NM_005063 |
| Nearest Ensembl: | ENSG00000099194 |
| Gene Name: | stearoyl-CoA desaturase (delta-9-desaturase) |
| Gene Alias: | FADS5 |
| Gene Description: | stearoyl-CoA desaturase |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
